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avrg: 12D miR HR13_24
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Results for Prdm4
Z-value: 0.35
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Transcription factors associated with Prdm4
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
Prdm4
|
ENSMUSG00000035529.9 | PR domain containing 4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| Prdm4 | mm10_v2_chr10_-_85916902_85917006 | -0.82 | 2.1e-03 | Click! |
Activity profile of Prdm4 motif
Sorted Z-values of Prdm4 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr7_+_44198191 | 0.28 |
ENSMUST00000085450.2
|
Klk1b3
|
kallikrein 1-related peptidase b3 |
| chr11_+_102604370 | 0.27 |
ENSMUST00000057893.5
|
Fzd2
|
frizzled homolog 2 (Drosophila) |
| chr5_-_4758216 | 0.25 |
ENSMUST00000054294.4
|
Fzd1
|
frizzled homolog 1 (Drosophila) |
| chr1_+_74391479 | 0.23 |
ENSMUST00000027367.7
|
Ctdsp1
|
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 |
| chr12_+_51377560 | 0.12 |
ENSMUST00000021335.5
|
Scfd1
|
Sec1 family domain containing 1 |
| chr9_+_106626582 | 0.10 |
ENSMUST00000171091.1
|
Iqcf6
|
IQ motif containing F6 |
| chr18_+_42053692 | 0.10 |
ENSMUST00000074679.3
|
Sh3rf2
|
SH3 domain containing ring finger 2 |
| chr18_+_42053648 | 0.09 |
ENSMUST00000072008.4
|
Sh3rf2
|
SH3 domain containing ring finger 2 |
| chr11_-_69369377 | 0.09 |
ENSMUST00000092971.6
ENSMUST00000108661.1 |
Chd3
|
chromodomain helicase DNA binding protein 3 |
| chrX_+_136927320 | 0.07 |
ENSMUST00000059808.3
|
H2bfm
|
H2B histone family, member M |
| chr7_-_30743681 | 0.06 |
ENSMUST00000182634.1
|
Gapdhs
|
glyceraldehyde-3-phosphate dehydrogenase, spermatogenic |
| chr3_+_37348645 | 0.06 |
ENSMUST00000038885.3
|
Fgf2
|
fibroblast growth factor 2 |
| chr5_-_142817387 | 0.04 |
ENSMUST00000036253.6
|
Tnrc18
|
trinucleotide repeat containing 18 |
| chr12_+_113152012 | 0.04 |
ENSMUST00000006523.7
|
Crip1
|
cysteine-rich protein 1 (intestinal) |
| chr15_-_99474696 | 0.03 |
ENSMUST00000040313.4
|
Bcdin3d
|
BCDIN3 domain containing |
| chr11_-_43836243 | 0.02 |
ENSMUST00000167574.1
|
Adra1b
|
adrenergic receptor, alpha 1b |
| chr19_-_4163285 | 0.01 |
ENSMUST00000118483.1
ENSMUST00000025749.7 |
Rps6kb2
|
ribosomal protein S6 kinase, polypeptide 2 |
| chr2_+_97467657 | 0.01 |
ENSMUST00000059049.7
|
Lrrc4c
|
leucine rich repeat containing 4C |
| chr5_-_144965793 | 0.01 |
ENSMUST00000110677.1
ENSMUST00000085684.4 ENSMUST00000100461.2 |
Smurf1
|
SMAD specific E3 ubiquitin protein ligase 1 |
| chr5_-_142817654 | 0.00 |
ENSMUST00000151477.1
|
Tnrc18
|
trinucleotide repeat containing 18 |
Network of associatons between targets according to the STRING database.
First level regulatory network of Prdm4
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.2 | GO:0035425 | autocrine signaling(GO:0035425) |
| 0.1 | 0.3 | GO:0007223 | G-protein coupled receptor signaling pathway coupled to cGMP nucleotide second messenger(GO:0007199) Wnt signaling pathway, calcium modulating pathway(GO:0007223) |
| 0.0 | 0.1 | GO:0060128 | corticotropin hormone secreting cell differentiation(GO:0060128) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.5 | GO:0042813 | Wnt-activated receptor activity(GO:0042813) |
| 0.0 | 0.2 | GO:0008420 | CTD phosphatase activity(GO:0008420) |
| 0.0 | 0.1 | GO:0004365 | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity(GO:0004365) glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity(GO:0043891) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.5 | PID WNT SIGNALING PATHWAY | Wnt signaling network |