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DANIO-CODE
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Results for arid5b
Z-value: 1.11
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Transcription factors associated with arid5b
Network of associatons between targets according to the STRING database.
First level regulatory network of arid5b
| Promoter | Score | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr21_-_2296253 Show fit | 3.13 |
ENSDART00000162867
|
zgc:66483 |
|
| chr22_+_818795 Show fit | 3.13 |
ENSDART00000003325
|
DENN/MADD domain containing 2Db |
|
| chr18_-_16964811 Show fit | 2.60 |
ENSDART00000100126
|
A kinase (PRKA) interacting protein 1 |
|
| chr14_-_8634381 Show fit | 2.32 |
ENSDART00000129030
|
zgc:153681 |
|
| chr7_-_73613531 Show fit | 2.29 |
ENSDART00000128137
|
zgc:92594 |
|
| chr2_-_57339717 Show fit | 2.21 |
ENSDART00000150034
|
protein inhibitor of activated STAT, 4b |
|
| chr5_-_14000166 Show fit | 1.95 |
ENSDART00000099566
|
si:ch211-244o22.2 |
|
| chr19_-_10411573 Show fit | 1.92 |
ENSDART00000171232
|
coiled-coil domain containing 106b |
|
| chr13_-_6123969 Show fit | 1.92 |
ENSDART00000161163
|
tubulin, alpha 4 like |
|
| chr14_+_8634518 Show fit | 1.90 |
ENSDART00000159920
|
ribosomal protein S6 kinase a, like |
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.1 | GO:0009648 | photoperiodism(GO:0009648) |
| 0.2 | 2.6 | GO:1901222 | regulation of NIK/NF-kappaB signaling(GO:1901222) |
| 0.2 | 2.5 | GO:0006978 | DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator(GO:0006978) DNA damage response, signal transduction resulting in transcription(GO:0042772) |
| 0.1 | 2.2 | GO:0016925 | protein sumoylation(GO:0016925) |
| 0.1 | 1.9 | GO:0035307 | positive regulation of dephosphorylation(GO:0035306) positive regulation of protein dephosphorylation(GO:0035307) |
| 0.2 | 1.7 | GO:1904666 | regulation of ubiquitin protein ligase activity(GO:1904666) |
| 0.0 | 1.7 | GO:0006457 | protein folding(GO:0006457) |
| 0.0 | 1.7 | GO:0006869 | lipid transport(GO:0006869) |
| 0.1 | 1.6 | GO:0032418 | lysosome localization(GO:0032418) |
| 0.3 | 1.4 | GO:0010032 | meiotic chromosome condensation(GO:0010032) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 13.1 | GO:0005654 | nucleoplasm(GO:0005654) |
| 0.2 | 3.1 | GO:0034751 | aryl hydrocarbon receptor complex(GO:0034751) |
| 0.0 | 2.7 | GO:0005819 | spindle(GO:0005819) |
| 0.0 | 2.3 | GO:0005874 | microtubule(GO:0005874) |
| 0.0 | 1.7 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.1 | 1.6 | GO:0031083 | BLOC-1 complex(GO:0031083) |
| 0.0 | 1.6 | GO:0005635 | nuclear envelope(GO:0005635) |
| 0.2 | 1.4 | GO:0005784 | Sec61 translocon complex(GO:0005784) |
| 0.1 | 1.3 | GO:0098827 | endoplasmic reticulum tubular network(GO:0071782) endoplasmic reticulum subcompartment(GO:0098827) |
| 0.0 | 1.3 | GO:0000779 | condensed chromosome, centromeric region(GO:0000779) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.2 | GO:0061665 | SUMO ligase activity(GO:0061665) |
| 0.0 | 1.9 | GO:0005200 | structural constituent of cytoskeleton(GO:0005200) |
| 0.0 | 1.9 | GO:0042393 | histone binding(GO:0042393) |
| 0.1 | 1.8 | GO:0004711 | ribosomal protein S6 kinase activity(GO:0004711) |
| 0.3 | 1.7 | GO:0016971 | flavin-linked sulfhydryl oxidase activity(GO:0016971) thiol oxidase activity(GO:0016972) |
| 0.1 | 1.7 | GO:0015248 | sterol transporter activity(GO:0015248) |
| 0.2 | 1.4 | GO:0051920 | peroxiredoxin activity(GO:0051920) |
| 0.0 | 1.3 | GO:0031624 | ubiquitin conjugating enzyme binding(GO:0031624) |
| 0.2 | 1.1 | GO:0004396 | glucokinase activity(GO:0004340) hexokinase activity(GO:0004396) glucose binding(GO:0005536) fructokinase activity(GO:0008865) mannokinase activity(GO:0019158) |
| 0.1 | 1.0 | GO:0061578 | Lys63-specific deubiquitinase activity(GO:0061578) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.7 | PID PLK1 PATHWAY | PLK1 signaling events |
| 0.0 | 1.4 | PID AURORA B PATHWAY | Aurora B signaling |
| 0.0 | 1.1 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.0 | 1.1 | PID P73PATHWAY | p73 transcription factor network |
| 0.0 | 1.0 | PID RHOA REG PATHWAY | Regulation of RhoA activity |
| 0.0 | 1.0 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
| 0.0 | 0.7 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
| 0.0 | 0.4 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
| 0.0 | 0.4 | PID ARF6 TRAFFICKING PATHWAY | Arf6 trafficking events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.7 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.0 | 1.4 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.0 | 1.4 | REACTOME ER PHAGOSOME PATHWAY | Genes involved in ER-Phagosome pathway |
| 0.1 | 1.0 | REACTOME POST CHAPERONIN TUBULIN FOLDING PATHWAY | Genes involved in Post-chaperonin tubulin folding pathway |
| 0.0 | 1.0 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.2 | 0.9 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.9 | REACTOME MICRORNA MIRNA BIOGENESIS | Genes involved in MicroRNA (miRNA) Biogenesis |
| 0.0 | 0.7 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.0 | 0.4 | REACTOME INSULIN SYNTHESIS AND PROCESSING | Genes involved in Insulin Synthesis and Processing |
| 0.0 | 0.1 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |