Project
DANIO-CODE
Navigation
Downloads
Results for snai1a
Z-value: 3.51
Motif logo
Transcription factors associated with snai1a
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| snai1a | dr10_dc_chr11_-_25019899_25019981 | 0.64 | 7.8e-03 | Click! |
Network of associatons between targets according to the STRING database.
First level regulatory network of snai1a
| Promoter | Score | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr7_+_67475765 Show fit | 8.79 |
ENSDART00000160086
|
zgc:162592 |
|
| chr23_+_540624 Show fit | 7.72 |
ENSDART00000034707
|
LSM family member 14B |
|
| chr11_+_30005768 Show fit | 7.24 |
ENSDART00000167618
|
ENSDARG00000100936 |
|
| chr12_-_4264663 Show fit | 7.21 |
ENSDART00000152521
|
carbonic anhydrase XVb |
|
| chr1_-_44892852 Show fit | 6.48 |
ENSDART00000160961
|
activating transcription factor 7 interacting protein |
|
| chr1_-_44892600 Show fit | 6.34 |
ENSDART00000149155
|
activating transcription factor 7 interacting protein |
|
| chr23_+_2786407 Show fit | 6.34 |
ENSDART00000066086
|
zgc:114123 |
|
| chr12_+_30389706 Show fit | 6.04 |
|
|
|
| chr7_-_55346967 Show fit | 6.00 |
ENSDART00000135304
|
poly(A) binding protein, nuclear 1-like (cytoplasmic) |
|
| chr21_-_804453 Show fit | 5.86 |
|
|
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.7 | 20.7 | GO:0090309 | methylation-dependent chromatin silencing(GO:0006346) positive regulation of chromatin silencing(GO:0031937) regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309) |
| 0.7 | 19.7 | GO:0034626 | fatty acid elongation, saturated fatty acid(GO:0019367) fatty acid elongation, unsaturated fatty acid(GO:0019368) fatty acid elongation, monounsaturated fatty acid(GO:0034625) fatty acid elongation, polyunsaturated fatty acid(GO:0034626) |
| 0.1 | 18.6 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.5 | 18.4 | GO:0048599 | oocyte development(GO:0048599) |
| 0.1 | 18.0 | GO:0018105 | peptidyl-serine phosphorylation(GO:0018105) |
| 1.1 | 17.9 | GO:0060046 | binding of sperm to zona pellucida(GO:0007339) sperm-egg recognition(GO:0035036) egg coat formation(GO:0035803) regulation of acrosome reaction(GO:0060046) positive regulation of acrosome reaction(GO:2000344) |
| 0.6 | 13.5 | GO:0008354 | germ cell migration(GO:0008354) |
| 1.8 | 12.6 | GO:0045737 | positive regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045737) positive regulation of cyclin-dependent protein kinase activity(GO:1904031) |
| 0.2 | 12.1 | GO:0035303 | regulation of dephosphorylation(GO:0035303) |
| 1.2 | 10.5 | GO:0071880 | adenylate cyclase-activating adrenergic receptor signaling pathway(GO:0071880) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 22.3 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
| 0.3 | 18.8 | GO:0005871 | kinesin complex(GO:0005871) |
| 0.1 | 12.9 | GO:0005813 | centrosome(GO:0005813) |
| 0.0 | 12.2 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.5 | 9.7 | GO:0043186 | P granule(GO:0043186) |
| 0.2 | 9.6 | GO:0005776 | autophagosome(GO:0005776) |
| 0.1 | 8.9 | GO:0000786 | nucleosome(GO:0000786) |
| 0.0 | 8.7 | GO:0005739 | mitochondrion(GO:0005739) |
| 0.6 | 8.0 | GO:0034992 | microtubule organizing center attachment site(GO:0034992) LINC complex(GO:0034993) |
| 1.1 | 7.6 | GO:0032133 | chromosome passenger complex(GO:0032133) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 22.6 | GO:0030695 | GTPase regulator activity(GO:0030695) |
| 0.7 | 19.7 | GO:0102338 | fatty acid elongase activity(GO:0009922) 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.3 | 19.5 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 1.1 | 17.9 | GO:0032190 | acrosin binding(GO:0032190) |
| 0.5 | 14.7 | GO:0008157 | protein phosphatase 1 binding(GO:0008157) |
| 0.8 | 14.6 | GO:0004697 | protein kinase C activity(GO:0004697) calcium-dependent protein kinase C activity(GO:0004698) |
| 0.7 | 13.6 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.2 | 11.9 | GO:0016538 | cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538) |
| 0.1 | 11.7 | GO:0008017 | microtubule binding(GO:0008017) |
| 1.0 | 11.0 | GO:0008494 | translation activator activity(GO:0008494) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 5.9 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.2 | 5.7 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
| 0.2 | 4.0 | SIG PIP3 SIGNALING IN B LYMPHOCYTES | Genes related to PIP3 signaling in B lymphocytes |
| 0.2 | 3.7 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
| 0.2 | 3.5 | PID ECADHERIN KERATINOCYTE PATHWAY | E-cadherin signaling in keratinocytes |
| 0.2 | 3.5 | NABA BASEMENT MEMBRANES | Genes encoding structural components of basement membranes |
| 0.1 | 3.5 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.2 | 3.2 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
| 0.1 | 3.2 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.4 | 3.1 | PID INTEGRIN4 PATHWAY | Alpha6 beta4 integrin-ligand interactions |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 6.3 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
| 0.6 | 5.8 | REACTOME VOLTAGE GATED POTASSIUM CHANNELS | Genes involved in Voltage gated Potassium channels |
| 0.2 | 5.8 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
| 0.3 | 5.4 | REACTOME NETRIN1 SIGNALING | Genes involved in Netrin-1 signaling |
| 0.1 | 5.1 | REACTOME MITOCHONDRIAL PROTEIN IMPORT | Genes involved in Mitochondrial Protein Import |
| 0.2 | 4.5 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 1.1 | 4.3 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 24 HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 24-hydroxycholesterol |
| 0.1 | 4.2 | REACTOME CELL JUNCTION ORGANIZATION | Genes involved in Cell junction organization |
| 0.2 | 4.1 | REACTOME CHOLESTEROL BIOSYNTHESIS | Genes involved in Cholesterol biosynthesis |
| 0.1 | 4.0 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |