GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
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Gene Symbol	Gene ID	Gene Info
acrR Links RegulonDB EcoCyc	acrR	AcrR DNA-binding transcriptional repressor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
acrR		0.95	2.8e-04	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
acrR Show fit	6.29		acrR Links RegulonDB EcoCyc Show fit	AcrR DNA-binding transcriptional repressor
soxR Show fit	4.63		soxR Links RegulonDB EcoCyc Show fit	SoxR DNA-binding transcriptional dual regulator
marRAB Show fit	4.50		marB Links RegulonDB EcoCyc Show fit marA Links RegulonDB EcoCyc Show fit marR Links RegulonDB EcoCyc Show fit	multiple antibiotic resistance protein MarA DNA-binding transcriptional dual regulator MarR DNA-binding transcriptional repressor
acrAB Show fit	0.03		acrB Links RegulonDB EcoCyc Show fit acrA Links RegulonDB EcoCyc Show fit	AcrAB-TolC multidrug efflux pump - permease subunit AcrAB-TolC multidrug efflux pump - membrane fusion protein

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.5	4.5	GO:0071236	cellular response to antibiotic(GO:0071236) cellular response to toxic substance(GO:0097237)
0.2	6.3	GO:0042493	response to drug(GO:0042493)
0.1	4.6	GO:0006979	response to oxidative stress(GO:0006979)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	4.5	GO:0030288	outer membrane-bounded periplasmic space(GO:0030288)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.9	6.3	GO:0008144	drug binding(GO:0008144)
0.3	4.6	GO:0051537	2 iron, 2 sulfur cluster binding(GO:0051537)
0.0	0.9	GO:0000975	regulatory region DNA binding(GO:0000975) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212)
0.0	0.0	GO:0015307	drug:proton antiporter activity(GO:0015307)