GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
adiY Links RegulonDB EcoCyc	adiY	AdiY DNA-binding transcriptional activator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
adiY		-0.93	9.0e-04	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
gadAX Show fit	5.74		gadX Links RegulonDB EcoCyc Show fit gadA Links RegulonDB EcoCyc Show fit	GadX DNA-binding transcriptional dual regulator glutamate decarboxylase A subunit
gadBC Show fit	4.41		gadB Links RegulonDB EcoCyc Show fit gadC Links RegulonDB EcoCyc Show fit	glutamate decarboxylase B subunit glutamic acid:4-aminobutyrate antiporter
adiA Show fit	3.66		adiA Links RegulonDB EcoCyc Show fit	arginine decarboxylase, degradative
gltBDF Show fit	0.19		gltB Links RegulonDB EcoCyc Show fit gltD Links RegulonDB EcoCyc Show fit gltF Links RegulonDB EcoCyc Show fit	glutamate synthase, large subunit glutamate synthase, small subunit periplasmic protein

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
3.5	13.8	GO:0045852	pH elevation(GO:0045852) intracellular pH elevation(GO:0051454)
0.1	0.2	GO:0019676	ammonia assimilation cycle(GO:0019676)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	14.0	GO:0005829	cytosol(GO:0005829)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.7	13.8	GO:0016831	carboxy-lyase activity(GO:0016831)
0.0	0.2	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638)