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GSE55662: Plasticity of transcriptional regulation under antibiotic stress
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Results for AgaR
Z-value: 0.97
Transcription factors associated with AgaR
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
agaR
|
agaR | AgaR DNA-binding transcriptional repressor |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| agaR | -0.62 | 1.0e-01 | Click! |
Activity profile of AgaR motif
Sorted Z-values of AgaR motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| agaS-kbaY-agaBCDI | 7.87 |
agaC
agaB
kbaY
agaD
agaI
agaS
|
galactosamine PTS permease (cryptic) - AgaC subunit galactosamine PTS permease (cryptic) - AgaB subunit tagatose-1,6-bisphosphate aldolase 1 subunit KbaY galactosamine PTS permease (cryptic) - AgaD subunit predicted galactosamine-6-phosphate isomerase putative tagatose-6-phosphate aldose/ketose isomerase |
|
| kbaZ-agaVWA | 3.16 |
agaA
agaW
agaV
kbaZ
|
predicted truncated N-acetylgalactosamine-6-phosphate deacetylase N-acetyl-D-galactosamine PTS permease (cryptic) - AgaW subunit (pseudogene) N-acetyl-D-galactosamine PTS permease (cryptic) - AgaV subunit tagatose-1,6-bisphosphate aldolase 1 subunit KbaZ |
|
| agaR | 0.89 |
agaR
|
AgaR DNA-binding transcriptional repressor |
Network of associatons between targets according to the STRING database.
First level regulatory network of AgaR
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 11.0 | GO:0034219 | carbohydrate transmembrane transport(GO:0034219) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 11.0 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 7.9 | GO:0016832 | aldehyde-lyase activity(GO:0016832) |
| 0.1 | 3.2 | GO:0051119 | sugar transmembrane transporter activity(GO:0051119) |