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GSE55662: Plasticity of transcriptional regulation under antibiotic stress
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Results for AllR
Z-value: 0.98
Transcription factors associated with AllR
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
allR
|
allR | AllR DNA-binding transcriptional repressor |
Activity profile of AllR motif
Sorted Z-values of AllR motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| gcl-hyi-glxR-ybbW-allB-ybbY-glxK | 5.50 |
allB
glxK
hyi
gcl
glxR
ybbY
ybbW
|
allantoinase glycerate kinase II hydroxypyruvate isomerase glyoxylate carboligase tartronate semialdehyde reductase 2 putative transport protein, nucleobase:cation symporter-2 (NCS2) family putative transporter, nucleobase:cation symporter-1 (NCS1) family |
|
| allS | 5.05 |
allS
|
AllS transcriptional activator |
|
| allA | 1.60 |
allA
|
ureidoglycolate lyase |
Network of associatons between targets according to the STRING database.
First level regulatory network of AllR
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.8 | 5.5 | GO:0006145 | purine nucleobase catabolic process(GO:0006145) |
| 0.1 | 5.1 | GO:0051254 | positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.5 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 5.5 | GO:0016812 | nucleobase transmembrane transporter activity(GO:0015205) oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor(GO:0016662) hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides(GO:0016812) |
| 0.5 | 1.6 | GO:0016842 | amidine-lyase activity(GO:0016842) |
| 0.1 | 5.1 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |