GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
argP Links RegulonDB EcoCyc	argP	ArgP transcriptional activator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
argP		0.54	1.7e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
argO Show fit	2.57		argO Links RegulonDB EcoCyc Show fit	L-arginine exporter
lysC Show fit	1.68		lysC Links RegulonDB EcoCyc Show fit	aspartate kinase III
lysP Show fit	1.28		lysP Links RegulonDB EcoCyc Show fit	lysine:H+ symporter
lysA Show fit	0.95		lysA Links RegulonDB EcoCyc Show fit	diaminopimelate decarboxylase
dapB Show fit	0.47		dapB Links RegulonDB EcoCyc Show fit	4-hydroxy-tetrahydrodipicolinate reductase
argP Show fit	0.17		argP Links RegulonDB EcoCyc Show fit	ArgP transcriptional activator
dnaAN-recF Show fit	0.14		dnaA Links RegulonDB EcoCyc Show fit recF Links RegulonDB EcoCyc Show fit dnaN Links RegulonDB EcoCyc Show fit	chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator ssDNA and dsDNA binding, ATP binding DNA polymerase III, β subunit

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.6	1.7	GO:0009090	homoserine biosynthetic process(GO:0009090) homoserine metabolic process(GO:0009092)
0.5	2.6	GO:0015809	arginine transport(GO:0015809) L-arginine transport(GO:1902023)
0.4	1.3	GO:0015819	lysine transport(GO:0015819) L-lysine transport(GO:1902022)
0.2	1.0	GO:0009089	lysine biosynthetic process via diaminopimelate(GO:0009089)
0.1	0.1	GO:0006275	regulation of DNA replication(GO:0006275)
0.1	0.2	GO:2000104	regulation of DNA-dependent DNA replication initiation(GO:0030174) negative regulation of DNA-dependent DNA replication(GO:2000104)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	3.8	GO:0005887	integral component of plasma membrane(GO:0005887)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.6	2.6	GO:0015181	arginine transmembrane transporter activity(GO:0015181)
0.6	1.7	GO:0004072	aspartate kinase activity(GO:0004072) amino acid kinase activity(GO:0019202)
0.1	1.3	GO:0015171	amino acid transmembrane transporter activity(GO:0015171)
0.1	1.0	GO:0016831	carboxy-lyase activity(GO:0016831)
0.0	0.5	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor(GO:0016628)
0.0	0.2	GO:0003681	bent DNA binding(GO:0003681)