GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
cytR Links RegulonDB EcoCyc	cytR	CytR DNA-binding transcriptional repressor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
cytR		0.97	5.9e-05	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
nupC Show fit	2.09		nupC Links RegulonDB EcoCyc Show fit	nucleoside:H+ symporter NupC
tsx Show fit	2.08		tsx Links RegulonDB EcoCyc Show fit	nucleoside channel; receptor of phage T6 and colicin K
nupG Show fit	1.92		nupG Links RegulonDB EcoCyc Show fit	nucleoside:H+ symporter NupG
udp Show fit	1.82		udp Links RegulonDB EcoCyc Show fit	uridine phosphorylase
cytR Show fit	1.77		cytR Links RegulonDB EcoCyc Show fit	CytR DNA-binding transcriptional repressor
ycdZ Show fit	1.51		ycdZ Links RegulonDB EcoCyc Show fit	predicted inner membrane protein
cdd Show fit	0.91		cdd Links RegulonDB EcoCyc Show fit	cytidine deaminase

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.2	6.1	GO:0015858	nucleoside transport(GO:0015858)
0.9	1.8	GO:0034214	protein hexamerization(GO:0034214)
0.2	0.9	GO:0046133	pyrimidine ribonucleoside metabolic process(GO:0046131) pyrimidine ribonucleoside catabolic process(GO:0046133) pyrimidine nucleoside catabolic process(GO:0046135)
0.0	1.8	GO:1903507	negative regulation of transcription, DNA-templated(GO:0045892) negative regulation of RNA biosynthetic process(GO:1902679) negative regulation of nucleic acid-templated transcription(GO:1903507)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.4	2.1	GO:0046930	pore complex(GO:0046930)
0.0	4.0	GO:0005887	integral component of plasma membrane(GO:0005887)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.2	6.1	GO:0005337	nucleoside transmembrane transporter activity(GO:0005337) nucleobase-containing compound transmembrane transporter activity(GO:0015932)
0.2	1.8	GO:0030955	potassium ion binding(GO:0030955)
0.1	0.9	GO:0019239	deaminase activity(GO:0019239)
0.1	1.8	GO:0000976	transcription regulatory region sequence-specific DNA binding(GO:0000976)