GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
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Gene Symbol	Gene ID	Gene Info
exuR Links RegulonDB EcoCyc	exuR	ExuR DNA-binding transcriptional repressor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
exuR		0.89	2.9e-03	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
uxuAB Show fit	2.81		uxuA Links RegulonDB EcoCyc Show fit uxuB Links RegulonDB EcoCyc Show fit	D-mannonate dehydratase D-mannonate oxidoreductase
exuR Show fit	1.99		exuR Links RegulonDB EcoCyc Show fit	ExuR DNA-binding transcriptional repressor
exuT Show fit	1.58		exuT Links RegulonDB EcoCyc Show fit	hexuronate transporter
uxaB Show fit	1.31		uxaB Links RegulonDB EcoCyc Show fit	altronate oxidoreductase
uxaCA Show fit	0.35		uxaA Links RegulonDB EcoCyc Show fit uxaC Links RegulonDB EcoCyc Show fit	D-altronate dehydratase D-glucuronate isomerase/D-galacturonate isomerase

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.5	4.5	GO:0006063	uronic acid metabolic process(GO:0006063)
0.1	1.6	GO:0015718	monocarboxylic acid transport(GO:0015718) monosaccharide transport(GO:0015749)
0.0	2.0	GO:1903507	negative regulation of transcription, DNA-templated(GO:0045892) negative regulation of RNA biosynthetic process(GO:1902679) negative regulation of nucleic acid-templated transcription(GO:1903507)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	3.2	GO:0008198	ferrous iron binding(GO:0008198)
0.1	1.6	GO:0008028	monocarboxylic acid transmembrane transporter activity(GO:0008028) monosaccharide transmembrane transporter activity(GO:0015145)
0.1	1.3	GO:0051287	NAD binding(GO:0051287)