Project

GSE55662: Plasticity of transcriptional regulation under antibiotic stress

Navigation
Downloads

Results for GadE-RcsB

Z-value: 0.81

Transcription factors associated with GadE-RcsB

Gene Symbol Gene ID Gene Info
gadE
gadE GadE DNA-binding transcriptional activator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
gadE-0.686.2e-02Click!

Activity profile of GadE-RcsB motif

Sorted Z-values of GadE-RcsB motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
gadAX 3.46
gadX
gadA
GadX DNA-binding transcriptional dual regulator
glutamate decarboxylase A subunit
aslB 2.06
aslB
predicted anaerobic sulfatase maturation enzyme
yhiM 1.26
yhiM
inner membrane protein with a role in acid resistance
adiC 0.86
adiC
AdiC arginine:agmatine antiporter
slp-dctR 0.79
slp
dctR
starvation lipoprotein
predicted DNA-binding transcriptional regulator
cadBA 0.02
cadA
cadB
lysine decarboxylase 1
lysine:cadaverine antiporter

Network of associatons between targets according to the STRING database.

First level regulatory network of GadE-RcsB

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.1 4.3 GO:0051454 pH elevation(GO:0045852) intracellular pH elevation(GO:0051454)
0.3 0.8 GO:0043471 regulation of cellular catabolic process(GO:0031329) regulation of cellular carbohydrate catabolic process(GO:0043471)
0.3 1.3 GO:0071229 cellular response to acid chemical(GO:0071229)
0.1 2.1 GO:0051604 protein maturation(GO:0051604)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.8 GO:0019867 outer membrane(GO:0019867)
0.0 5.6 GO:0016020 membrane(GO:0016020)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 3.5 GO:0001140 transcriptional activator activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding(GO:0001140)
0.2 0.9 GO:0015181 arginine transmembrane transporter activity(GO:0015181)