ISMARA results: NarP

Project

GSE55662: Plasticity of transcriptional regulation under antibiotic stress

Navigation

Downloads

Results for NarP

Z-value: 1.46

Transcription factors associated with NarP

Gene Symbol	Gene ID	Gene Info
narP RegulonDB EcoCyc	narP	NarP transcriptional dual regulator

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
narP		-0.50	2.1e-01	Click!

Activity profile of NarP motif

Sorted Z-values of NarP motif

Top targets:

Promoter	Log-likelihood	Transcript	Gene	Gene Info
yeaR-yoaG Show fit	12.81		yoaG RegulonDB EcoCyc Show fit yeaR RegulonDB EcoCyc Show fit	predicted protein conserved protein
nirBDC-cysG Show fit	7.35		nirD RegulonDB EcoCyc Show fit cysG RegulonDB EcoCyc Show fit nirC RegulonDB EcoCyc Show fit nirB RegulonDB EcoCyc Show fit	nitrite reductase, small subunit siroheme synthase subunit nitrite transporter NirC nitrite reductase, large subunit
ydhYVWXUT Show fit	6.73		ydhY RegulonDB EcoCyc Show fit ydhX RegulonDB EcoCyc Show fit ydhW RegulonDB EcoCyc Show fit ydhV RegulonDB EcoCyc Show fit ydhU RegulonDB EcoCyc Show fit ydhT RegulonDB EcoCyc Show fit	predicted 4Fe-4S ferredoxin-type protein predicted 4Fe-4S ferredoxin-type protein predicted protein predicted oxidoreductase predicted cytochrome conserved protein
hyaABCDEF Show fit	4.78		hyaB RegulonDB EcoCyc Show fit hyaC RegulonDB EcoCyc Show fit hyaA RegulonDB EcoCyc Show fit hyaF RegulonDB EcoCyc Show fit hyaD RegulonDB EcoCyc Show fit hyaE RegulonDB EcoCyc Show fit	hydrogenase 1, large subunit hydrogenase 1, b-type cytochrome subunit hydrogenase 1, small subunit protein involved in nickel incorporation into hydrogenase 1 proteins protein involved in processing of HyaA and HyaB proteins protein involved in quality control of HyaA
ytfE Show fit	4.46		ytfE RegulonDB EcoCyc Show fit	iron-sulfur cluster repair protein YtfE
ydeP Show fit	4.17		ydeP RegulonDB EcoCyc Show fit	acid resistance protein
norVW Show fit	3.03		norW RegulonDB EcoCyc Show fit norV RegulonDB EcoCyc Show fit	NADH:flavorubredoxin reductase flavorubredoxin
nrfABCDEFG Show fit	1.03		nrfF RegulonDB EcoCyc Show fit nrfG RegulonDB EcoCyc Show fit nrfD RegulonDB EcoCyc Show fit nrfE RegulonDB EcoCyc Show fit nrfB RegulonDB EcoCyc Show fit nrfC RegulonDB EcoCyc Show fit nrfA RegulonDB EcoCyc Show fit	activator of formate-dependent nitrite reductase complex NrfG formate dependent nitrite reductase - NrfD subunit formate-dependent nitrite reductase; possible assembly function formate-dependent nitrite reductase - penta-heme cytochrome c formate-dependent nitrite reductase, 4Fe-4S subunit formate dependent nitrite reductase - NrfA subunit

Network of associatons between targets according to the STRING database.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.5	7.4	GO:0015707	nitrite transport(GO:0015707)
1.1	4.5	GO:0030091	protein repair(GO:0030091)
1.0	3.0	GO:1902170	cellular response to nitrogen compound(GO:1901699) cellular response to reactive nitrogen species(GO:1902170)
1.0	4.8	GO:0016485	protein processing(GO:0016485)
0.5	4.2	GO:0010447	response to acidic pH(GO:0010447)
0.3	1.0	GO:0019645	anaerobic electron transport chain(GO:0019645)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.7	3.7	GO:0031237	intrinsic component of periplasmic side of plasma membrane(GO:0031237)
0.1	7.7	GO:0030288	outer membrane-bounded periplasmic space(GO:0030288)
0.1	7.4	GO:0043234	protein complex(GO:0043234)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.5	7.4	GO:0004325	ferrochelatase activity(GO:0004325) nitrite transmembrane transporter activity(GO:0015113)
1.2	3.7	GO:0005048	signal sequence binding(GO:0005048)
0.3	1.0	GO:0016662	oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor(GO:0016662)
0.2	7.5	GO:0005506	iron ion binding(GO:0005506)