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GSE55662: Plasticity of transcriptional regulation under antibiotic stress
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Results for NikR
Z-value: 0.44
Transcription factors associated with NikR
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
nikR
|
nikR | NikR DNA-binding transcriptional repressor, Ni-binding |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| nikR | 0.92 | 1.0e-03 | Click! |
Activity profile of NikR motif
Sorted Z-values of NikR motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| nikABCDER | 2.46 |
nikB
nikC
nikA
nikD
nikE
nikR
|
nickel ABC transporter - membrane subunit nickel ABC transporter - membrane subunit nickel ABC transporter - periplasmic binding protein nickel ABC transporter - ATP binding subunit nickel ABC transporter - ATP binding subunit NikR DNA-binding transcriptional repressor, Ni-binding |
Network of associatons between targets according to the STRING database.
First level regulatory network of NikR
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 2.5 | GO:0015675 | nickel cation transport(GO:0015675) nickel cation transmembrane transport(GO:0035444) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.5 | GO:0055052 | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 2.5 | GO:0015099 | nickel cation transmembrane transporter activity(GO:0015099) |