GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
puuR Links RegulonDB EcoCyc	puuR	PuuR DNA-binding transcriptional repressor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
puuR		0.95	2.6e-04	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
puuAP Show fit	9.00		puuP Links RegulonDB EcoCyc Show fit puuA Links RegulonDB EcoCyc Show fit	putrescine:H+ symporter PuuP glutamate-putrescine ligase
puuDRCBE Show fit	5.02		puuR Links RegulonDB EcoCyc Show fit puuC Links RegulonDB EcoCyc Show fit puuB Links RegulonDB EcoCyc Show fit puuD Links RegulonDB EcoCyc Show fit puuE Links RegulonDB EcoCyc Show fit	PuuR DNA-binding transcriptional repressor γ-glutamyl-γ-aminobutyraldehyde dehydrogenase γ-glutamylputrescine oxidase γ-glutamyl-γ-aminobutyrate hydrolase 4-aminobutyrate aminotransferase

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
3.0	9.0	GO:0015846	polyamine transport(GO:0015846) putrescine transport(GO:0015847)
1.3	5.0	GO:0009447	polyamine catabolic process(GO:0006598) putrescine catabolic process(GO:0009447)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	9.0	GO:0005886	plasma membrane(GO:0005886)
0.0	5.0	GO:0005737	cytoplasm(GO:0005737)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.5	9.0	GO:0016880	organic cation transmembrane transporter activity(GO:0015101) acid-ammonia (or amide) ligase activity(GO:0016880)
1.3	5.0	GO:0003867	4-aminobutyrate transaminase activity(GO:0003867)