GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
rcsB Links RegulonDB EcoCyc	rcsB	DNA-binding transcriptional activator RcsB
rcsA Links RegulonDB EcoCyc	rcsA	DNA-binding transcriptional activator RcsA

Gene	Promoter	Pearson corr. coef.	P-value	Plot
rcsA		0.98	1.5e-05	Click!
rcsB		-0.95	2.5e-04	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
rcsA Show fit	6.57		rcsA Links RegulonDB EcoCyc Show fit	positive DNA-binding transcriptional regulator of capsular polysaccharide synthesis, activates its own expression
yjbEFGH Show fit	5.23		yjbG Links RegulonDB EcoCyc Show fit yjbF Links RegulonDB EcoCyc Show fit yjbE Links RegulonDB EcoCyc Show fit yjbH Links RegulonDB EcoCyc Show fit	conserved protein predicted lipoprotein predicted protein predicted porin
csgDEFG Show fit	4.67		csgG Links RegulonDB EcoCyc Show fit csgF Links RegulonDB EcoCyc Show fit csgE Links RegulonDB EcoCyc Show fit csgD Links RegulonDB EcoCyc Show fit	curli secretion channel curli assembly component curli transport specificity factor CsgD DNA-binding transcriptional dual regulator
wza-wzb-wzc-wcaAB Show fit	3.99		wcaA Links RegulonDB EcoCyc Show fit wcaB Links RegulonDB EcoCyc Show fit wzb Links RegulonDB EcoCyc Show fit wzc Links RegulonDB EcoCyc Show fit wza Links RegulonDB EcoCyc Show fit	predicted colanic acid biosynthesis glycosyl transferase predicted colanic acid biosynthesis acyl transferase protein-tyrosine phosphatase protein-tyrosine kinase lipoprotein required for capsular polysaccharide translocation through the outer membrane

View svg image
View png image

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.7	5.1	GO:0046379	extracellular polysaccharide biosynthetic process(GO:0045226) extracellular polysaccharide metabolic process(GO:0046379)
1.0	4.0	GO:0019344	cysteine biosynthetic process(GO:0019344)
0.7	4.7	GO:0043900	regulation of multi-organism process(GO:0043900) regulation of single-species biofilm formation(GO:1900190)
0.0	3.7	GO:0006351	transcription, DNA-templated(GO:0006351) nucleic acid-templated transcription(GO:0097659)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.7	5.2	GO:0045203	integral component of cell outer membrane(GO:0045203)
0.6	4.7	GO:0031246	intrinsic component of periplasmic side of cell outer membrane(GO:0031246)
0.0	4.0	GO:0005887	integral component of plasma membrane(GO:0005887)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.3	4.0	GO:0016413	O-acetyltransferase activity(GO:0016413)
0.2	4.7	GO:0000986	bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)