GSE55662: Plasticity of transcriptional regulation under antibiotic stress

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
torR Links RegulonDB EcoCyc	torR	TorR transcriptional dual regulator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
torR		0.06	8.9e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
tnaCAB Show fit	5.76		tnaA Links RegulonDB EcoCyc Show fit tnaC Links RegulonDB EcoCyc Show fit tnaB Links RegulonDB EcoCyc Show fit	tryptophanase tryptophanase operon leader peptide tryptophan:H+ symporter TnaB
tnaC Show fit	2.38		tnaC Links RegulonDB EcoCyc Show fit	tryptophanase operon leader peptide
hdeAB-yhiD Show fit	1.51		yhiD Links RegulonDB EcoCyc Show fit hdeB Links RegulonDB EcoCyc Show fit hdeA Links RegulonDB EcoCyc Show fit	inner membrane protein YhiD HdeB monomer HdeA monomer, chaperone active form

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.0	8.1	GO:0006521	regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238) regulation of tryptophan metabolic process(GO:0090357)
0.3	1.5	GO:0071468	cellular response to acidic pH(GO:0071468)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	5.0	GO:0005886	plasma membrane(GO:0005886)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.2	5.8	GO:0080146	L-cysteine desulfhydrase activity(GO:0080146)
0.5	1.5	GO:0051087	chaperone binding(GO:0051087)