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GSE55662: Plasticity of transcriptional regulation under antibiotic stress

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Results for YdeO

Z-value: 1.21

Transcription factors associated with YdeO

Gene Symbol Gene ID Gene Info
ydeO
ydeO YdeO DNA-binding transcriptional dual regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ydeO0.953.1e-04Click!

Activity profile of YdeO motif

Sorted Z-values of YdeO motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
safA-ydeO 7.69
ydeO
safA
YdeO DNA-binding transcriptional dual regulator
two-component system connector protein
hyaABCDEF 5.02
hyaB
hyaC
hyaA
hyaF
hyaD
hyaE
hydrogenase 1, large subunit
hydrogenase 1, b-type cytochrome subunit
hydrogenase 1, small subunit
protein involved in nickel incorporation into hydrogenase 1 proteins
protein involved in processing of HyaA and HyaB proteins
protein involved in quality control of HyaA
gadW 3.15
gadW
GadW DNA-binding transcriptional dual regulator
yiiS-uspD 2.23
yiiS
uspD
conserved protein
stress protein involved in resistance to UV irradiation
appCBXA 2.06
appC
appB
appA
appX
cytochrome bd-II terminal oxidase subunit I
cytochrome bd-II terminal oxidase subunit II
periplasmic protein with phosphoanhydride phosphatase and multiple inositol-polyphosphate phosphatase activity
small outer membrane protein
slp-dctR 1.48
slp
dctR
starvation lipoprotein
predicted DNA-binding transcriptional regulator
gadE 1.05
gadE
GadE DNA-binding transcriptional activator

Network of associatons between targets according to the STRING database.

First level regulatory network of YdeO

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 5.0 GO:0016485 protein processing(GO:0016485)
0.5 2.1 GO:0019646 aerobic electron transport chain(GO:0019646)
0.5 1.5 GO:0031329 regulation of cellular catabolic process(GO:0031329) regulation of cellular carbohydrate catabolic process(GO:0043471)
0.1 7.7 GO:1902680 positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508)
0.0 3.1 GO:0006974 cellular response to DNA damage stimulus(GO:0006974)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 5.0 GO:0031237 intrinsic component of periplasmic side of plasma membrane(GO:0031237)
0.7 2.1 GO:0070069 cytochrome complex(GO:0070069)
0.0 7.7 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 1.5 GO:0019867 outer membrane(GO:0019867)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.7 5.0 GO:0005048 signal sequence binding(GO:0005048)
0.7 2.1 GO:0050308 oxidoreductase activity, acting on diphenols and related substances as donors(GO:0016679) oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) sugar-phosphatase activity(GO:0050308)
0.1 10.8 GO:0003700 transcription factor activity, sequence-specific DNA binding(GO:0003700)