GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
acrR Links RegulonDB EcoCyc	acrR	AcrR DNA-binding transcriptional repressor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
acrR		0.01	9.5e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
soxS Show fit	3.84		soxS Links RegulonDB EcoCyc Show fit	SoxS DNA-binding transcriptional dual regulator
marRAB Show fit	2.61		marB Links RegulonDB EcoCyc Show fit marA Links RegulonDB EcoCyc Show fit marR Links RegulonDB EcoCyc Show fit	multiple antibiotic resistance protein MarA DNA-binding transcriptional dual regulator MarR DNA-binding transcriptional repressor
soxR Show fit	0.90		soxR Links RegulonDB EcoCyc Show fit	SoxR DNA-binding transcriptional dual regulator
acrR Show fit	0.44		acrR Links RegulonDB EcoCyc Show fit	AcrR DNA-binding transcriptional repressor

View svg image
View png image

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	2.6	GO:0071236	cellular response to antibiotic(GO:0071236) cellular response to toxic substance(GO:0097237)
0.0	4.3	GO:1903506	regulation of transcription, DNA-templated(GO:0006355) regulation of nucleic acid-templated transcription(GO:1903506) regulation of RNA biosynthetic process(GO:2001141)
0.0	0.9	GO:0006979	response to oxidative stress(GO:0006979)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	2.3	GO:0030288	outer membrane-bounded periplasmic space(GO:0030288)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.3	3.8	GO:0001098	basal transcription machinery binding(GO:0001098) bacterial-type RNA polymerase holo enzyme binding(GO:0001108)
0.1	0.4	GO:0008144	drug binding(GO:0008144)
0.1	2.6	GO:0001067	regulatory region DNA binding(GO:0000975) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212)
0.1	0.9	GO:0051537	2 iron, 2 sulfur cluster binding(GO:0051537)