GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
adiY Links RegulonDB EcoCyc	adiY	AdiY DNA-binding transcriptional activator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
adiY		-0.21	2.9e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
gltBDF Show fit	9.34		gltB Links RegulonDB EcoCyc Show fit gltD Links RegulonDB EcoCyc Show fit gltF Links RegulonDB EcoCyc Show fit	glutamate synthase, large subunit glutamate synthase, small subunit periplasmic protein
gadAX Show fit	5.29		gadX Links RegulonDB EcoCyc Show fit gadA Links RegulonDB EcoCyc Show fit	GadX DNA-binding transcriptional dual regulator glutamate decarboxylase A subunit

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
3.1	9.3	GO:0019676	ammonia assimilation cycle(GO:0019676)
0.4	1.5	GO:0045852	pH elevation(GO:0045852) intracellular pH elevation(GO:0051454)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	9.3	GO:0030288	outer membrane-bounded periplasmic space(GO:0030288)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.6	9.3	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638)
0.7	5.3	GO:0001140	transcriptional activator activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding(GO:0001140)