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GSE67402: E.coli regulatory changes under long-term starvation
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Results for AlsR
Z-value: 0.54
Transcription factors associated with AlsR
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
rpiR
|
rpiR | AlsR DNA-binding transcriptional repressor |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| rpiR | 0.64 | 3.4e-04 | Click! |
Activity profile of AlsR motif
Sorted Z-values of AlsR motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| rpiR-alsBACE | 5.51 |
rpiR
alsE
alsB
alsC
alsA
|
AlsR DNA-binding transcriptional repressor allulose-6-phosphate 3-epimerase D-allose ABC transporter - periplasmic binding protein D-allose ABC transporter - membrane subunit D-allose ABC transporter - ATP binding subunit |
|
| rpiB | 4.57 |
rpiB
|
allose-6-phosphate isomerase / ribose-5-phosphate isomerase B |
Network of associatons between targets according to the STRING database.
First level regulatory network of AlsR
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.9 | 5.5 | GO:0009052 | pentose-phosphate shunt, non-oxidative branch(GO:0009052) |
| 0.3 | 4.6 | GO:0019320 | hexose catabolic process(GO:0019320) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.5 | GO:0098533 | ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 5.5 | GO:0004750 | ribulose-phosphate 3-epimerase activity(GO:0004750) |
| 0.3 | 4.6 | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses(GO:0016861) |