GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
appY Links RegulonDB EcoCyc	appY	AppY DNA-binding transcriptional activator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
appY		0.30	1.3e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
hyaABCDEF Show fit	2.99		hyaB Links RegulonDB EcoCyc Show fit hyaC Links RegulonDB EcoCyc Show fit hyaA Links RegulonDB EcoCyc Show fit hyaF Links RegulonDB EcoCyc Show fit hyaD Links RegulonDB EcoCyc Show fit hyaE Links RegulonDB EcoCyc Show fit	hydrogenase 1, large subunit hydrogenase 1, b-type cytochrome subunit hydrogenase 1, small subunit protein involved in nickel incorporation into hydrogenase 1 proteins protein involved in processing of HyaA and HyaB proteins protein involved in quality control of HyaA
appCBXA Show fit	2.33		appC Links RegulonDB EcoCyc Show fit appB Links RegulonDB EcoCyc Show fit appA Links RegulonDB EcoCyc Show fit appX Links RegulonDB EcoCyc Show fit	cytochrome bd-II terminal oxidase subunit I cytochrome bd-II terminal oxidase subunit II periplasmic protein with phosphoanhydride phosphatase and multiple inositol-polyphosphate phosphatase activity small outer membrane protein

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.6	3.0	GO:0016485	protein processing(GO:0016485)
0.6	2.3	GO:0019646	aerobic electron transport chain(GO:0019646)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.8	2.3	GO:0070069	cytochrome complex(GO:0070069)
0.6	3.0	GO:0031237	intrinsic component of periplasmic side of plasma membrane(GO:0031237)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.0	3.0	GO:0005048	signal sequence binding(GO:0005048)
0.8	2.3	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors(GO:0016679) oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) sugar-phosphatase activity(GO:0050308)