GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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arcA | 0.48 | 1.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
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rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ Show fit | 13.32 |
30S ribosomal subunit protein S3 50S ribosomal subunit protein L22 50S ribosomal subunit protein L23 30S ribosomal subunit protein S10 50S ribosomal subunit protein L16 30S ribosomal subunit protein S19 30S ribosomal subunit protein S17 50S ribosomal subunit protein L29 50S ribosomal subunit protein L4 50S ribosomal subunit protein L2 50S ribosomal subunit protein L3 |
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nuoABCEFGHIJKLMN Show fit | 10.79 |
NADH:ubiquinone oxidoreductase, chain B NADH:ubiquinone oxidoreductase, chain CD NADH:ubiquinone oxidoreductase, membrane subunit A NADH:ubiquinone oxidoreductase, chain F NADH:ubiquinone oxidoreductase, chain G NADH:ubiquinone oxidoreductase, chain E NADH:ubiquinone oxidoreductase, membrane subunit J NADH:ubiquinone oxidoreductase, membrane subunit K NADH:ubiquinone oxidoreductase, membrane subunit H NADH:ubiquinone oxidoreductase, chain I NADH:ubiquinone oxidoreductase, membrane subunit N NADH:ubiquinone oxidoreductase, membrane subunit L NADH:ubiquinone oxidoreductase, membrane subunit M |
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sucABCD Show fit | 9.99 |
subunit of E1(0) component of 2-oxoglutarate dehydrogenase succinyl-CoA synthetase, β subunit dihydrolipoyltranssuccinylase succinyl-CoA synthetase, α subunit |
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aceEF Show fit | 8.58 |
pyruvate dehydrogenase, E2 subunit subunit of E1p component of pyruvate dehydrogenase complex |
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sucAB Show fit | 8.51 |
subunit of E1(0) component of 2-oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase |
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sdhCDAB-sucABCD Show fit | 8.05 |
subunit of E1(0) component of 2-oxoglutarate dehydrogenase succinyl-CoA synthetase, β subunit dihydrolipoyltranssuccinylase succinyl-CoA synthetase, α subunit succinate:quinone oxidoreductase, FAD binding protein succinate:quinone oxidoreductase, membrane protein SdhC succinate:quinone oxidoreductase, iron-sulfur cluster binding protein succinate:quinone oxidoreductase, membrane protein SdhD |
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lpd Show fit | 7.53 |
lipoamide dehydrogenase |
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acnB Show fit | 7.36 |
bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase |
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icd Show fit | 6.92 |
isocitrate dehydrogenase |
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oppABCDF Show fit | 6.86 |
peptide ABC transporter - periplasmic binding protein murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.9 | 21.1 | GO:0006099 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
3.4 | 13.5 | GO:1902600 | hydrogen ion transmembrane transport(GO:1902600) |
4.4 | 13.3 | GO:0060701 | negative regulation of nuclease activity(GO:0032074) negative regulation of ribonuclease activity(GO:0060701) negative regulation of endoribonuclease activity(GO:0060702) |
2.8 | 8.4 | GO:0035672 | oligopeptide transport(GO:0006857) oligopeptide transmembrane transport(GO:0035672) |
2.5 | 7.5 | GO:0019464 | glycine decarboxylation via glycine cleavage system(GO:0019464) |
2.5 | 7.4 | GO:0019626 | short-chain fatty acid catabolic process(GO:0019626) |
2.2 | 6.6 | GO:0019646 | aerobic electron transport chain(GO:0019646) |
2.1 | 6.3 | GO:0006108 | malate metabolic process(GO:0006108) |
0.5 | 5.8 | GO:0034599 | cellular response to oxidative stress(GO:0034599) |
1.8 | 5.3 | GO:0015847 | polyamine transport(GO:0015846) putrescine transport(GO:0015847) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 38.8 | GO:0005829 | cytosol(GO:0005829) |
8.9 | 26.6 | GO:0045239 | tricarboxylic acid cycle enzyme complex(GO:0045239) dihydrolipoyl dehydrogenase complex(GO:0045240) oxoglutarate dehydrogenase complex(GO:0045252) |
1.0 | 13.3 | GO:0015934 | large ribosomal subunit(GO:0015934) cytosolic large ribosomal subunit(GO:0022625) |
2.7 | 10.8 | GO:0098803 | respiratory chain(GO:0070469) plasma membrane respiratory chain(GO:0070470) respiratory chain complex(GO:0098803) |
0.2 | 8.4 | GO:0043190 | ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949) |
0.3 | 6.8 | GO:0019898 | extrinsic component of membrane(GO:0019898) |
2.1 | 6.3 | GO:0070069 | cytochrome complex(GO:0070069) |
0.6 | 3.2 | GO:0009380 | excinuclease repair complex(GO:0009380) |
0.1 | 3.0 | GO:0098796 | membrane protein complex(GO:0098796) |
0.1 | 0.4 | GO:0098567 | periplasmic side of plasma membrane(GO:0098567) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
8.9 | 26.6 | GO:0004149 | dihydrolipoyllysine-residue succinyltransferase activity(GO:0004149) oxoglutarate dehydrogenase (succinyl-transferring) activity(GO:0004591) oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor(GO:0016624) S-succinyltransferase activity(GO:0016751) |
4.6 | 13.8 | GO:0050136 | NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136) |
3.3 | 13.3 | GO:0008428 | RNA binding transcription factor activity(GO:0001070) transcription antitermination factor activity, RNA binding(GO:0001072) ribonuclease inhibitor activity(GO:0008428) |
2.9 | 8.6 | GO:0031405 | lipoic acid binding(GO:0031405) |
1.3 | 7.5 | GO:0016668 | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor(GO:0016668) |
2.3 | 6.9 | GO:0035673 | oligopeptide transporter activity(GO:0015198) peptidoglycan transporter activity(GO:0015647) oligopeptide transmembrane transporter activity(GO:0035673) |
0.3 | 6.9 | GO:0051287 | NAD binding(GO:0051287) |
0.4 | 6.4 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
2.0 | 6.0 | GO:0004659 | prenyltransferase activity(GO:0004659) |
1.9 | 5.8 | GO:0051920 | peroxiredoxin activity(GO:0051920) |
Log-likelihood per target | Total log-likelihood | Term | Description |
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2.7 | 8.1 | REACTOME TCA CYCLE AND RESPIRATORY ELECTRON TRANSPORT | Genes involved in The citric acid (TCA) cycle and respiratory electron transport |