GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
argR | 0.25 | 2.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
artJ Show fit | 6.23 |
L-arginine ABC transporter - periplasmic binding protein |
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argG Show fit | 3.69 |
argininosuccinate synthase |
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argCBH Show fit | 3.53 |
argininosuccinate lyase acetylglutamate kinase N-acetylglutamylphosphate reductase |
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argE Show fit | 3.35 |
acetylornithine deacetylase |
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artPIQM Show fit | 3.22 |
L-arginine ABC transporter - membrane subunit L-arginine ABC transporter - ATP binding subunit periplasmic binding protein ArtI L-arginine ABC transporter - membrane subunit |
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carAB Show fit | 3.06 |
carbamoyl phosphate synthetase, β chain carbamoyl phosphate synthetase, α chain |
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gltBDF Show fit | 2.81 |
glutamate synthase, large subunit glutamate synthase, small subunit periplasmic protein |
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argA Show fit | 2.14 |
N-acetylglutamate synthase |
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argI Show fit | 1.86 |
ornithine carbamoyltransferase chain I |
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hisJQMP Show fit | 1.82 |
lysine/arginine/ornithine ABC transporter / histidine ABC transporter - membrane subunit lysine / arginine / ornithine ABC transporter / histidine ABC transporter - ATP binding subunit lysine / arginine / ornithine ABC transporter / histidine ABC transporter - membrane subunit histidine ABC transporter - periplasmic binding protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.4 | 15.2 | GO:0009084 | glutamine family amino acid biosynthetic process(GO:0009084) |
2.8 | 11.3 | GO:0090467 | L-arginine import(GO:0043091) L-amino acid import(GO:0043092) arginine import(GO:0090467) L-arginine import across plasma membrane(GO:0097638) L-arginine import into cell(GO:1902765) L-arginine transmembrane transport(GO:1903400) arginine transmembrane transport(GO:1903826) |
0.3 | 0.9 | GO:0042150 | plasmid recombination(GO:0042150) |
0.2 | 0.5 | GO:0031119 | pseudouridine synthesis(GO:0001522) tRNA pseudouridine synthesis(GO:0031119) RNA 3'-end processing(GO:0031123) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 10.9 | GO:0030288 | outer membrane-bounded periplasmic space(GO:0030288) |
0.0 | 7.2 | GO:0005737 | cytoplasm(GO:0005737) |
0.3 | 3.2 | GO:0055052 | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052) |
0.1 | 3.1 | GO:1902494 | catalytic complex(GO:1902494) |
0.0 | 0.5 | GO:0015935 | small ribosomal subunit(GO:0015935) cytosolic small ribosomal subunit(GO:0022627) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 11.1 | GO:0016597 | amino acid binding(GO:0016597) |
0.1 | 3.7 | GO:0016879 | ligase activity, forming carbon-nitrogen bonds(GO:0016879) |
1.2 | 3.5 | GO:0016842 | amidine-lyase activity(GO:0016842) |
1.1 | 3.4 | GO:0050897 | cobalt ion binding(GO:0050897) |
1.1 | 3.2 | GO:0005275 | amine transmembrane transporter activity(GO:0005275) |
0.5 | 2.8 | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638) |
0.4 | 2.1 | GO:0008080 | N-acetyltransferase activity(GO:0008080) |
0.6 | 1.9 | GO:0016743 | carboxyl- or carbamoyltransferase activity(GO:0016743) |
0.0 | 0.9 | GO:0000975 | regulatory region DNA binding(GO:0000975) regulatory region nucleic acid binding(GO:0001067) transcription regulatory region DNA binding(GO:0044212) |
0.2 | 0.5 | GO:0004532 | 3'-5'-exoribonuclease activity(GO:0000175) exoribonuclease activity(GO:0004532) exoribonuclease activity, producing 5'-phosphomonoesters(GO:0016896) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.5 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |