GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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crp | 0.09 | 6.7e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
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cyaR Show fit | 6.97 |
CyaR |
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raiA Show fit | 5.77 |
stationary phase translation inhibitor and ribosome stability factor |
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mglBAC Show fit | 5.47 |
D-galactose / D-galactoside ABC transporter - ATP binding subunit D-galactose / D-galactoside ABC transporter - periplasmic binding protein D-galactose / D-galactoside ABC transporter - membrane subunit |
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dadAX Show fit | 5.02 |
D-amino acid dehydrogenase alanine racemase 2, PLP-binding |
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nanATEK-yhcH Show fit | 4.37 |
N-acetylneuraminate lyase N-acetylmannosamine kinase predicted N-acetylmannosamine-6-phosphate epimerase N-acetylneuraminate:H+ symporter conserved protein |
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pck Show fit | 4.34 |
phosphoenolpyruvate carboxykinase (ATP) |
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dctA Show fit | 4.11 |
C4 dicarboxylate / orotate:H+ symporter |
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rpoH Show fit | 4.03 |
RNA polymerase, sigma 32 (sigma H) factor |
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glpABC Show fit | 4.00 |
anaerobic glycerol-3-phosphate dehydrogenase subunit A anaerobic glycerol-3-phosphate dehydrogenase subunit C anaerobic glycerol-3-phosphate dehydrogenase subunit B |
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cstA Show fit | 3.96 |
peptide transporter induced by carbon starvation |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.1 | 8.5 | GO:0015791 | polyol transport(GO:0015791) |
2.0 | 8.1 | GO:0015757 | galactose transport(GO:0015757) |
1.9 | 7.5 | GO:0019262 | N-acetylneuraminate metabolic process(GO:0006054) N-acetylneuraminate catabolic process(GO:0019262) |
0.6 | 7.0 | GO:0046434 | organophosphate catabolic process(GO:0046434) |
1.7 | 6.6 | GO:0051053 | negative regulation of DNA replication(GO:0008156) negative regulation of DNA metabolic process(GO:0051053) |
0.9 | 6.2 | GO:0015740 | dicarboxylic acid transport(GO:0006835) C4-dicarboxylate transport(GO:0015740) |
1.4 | 5.8 | GO:0045900 | negative regulation of translational elongation(GO:0045900) |
1.8 | 5.5 | GO:0019478 | D-amino acid catabolic process(GO:0019478) |
0.2 | 5.0 | GO:0009267 | cellular response to starvation(GO:0009267) |
1.6 | 4.8 | GO:0018394 | peptidyl-lysine acetylation(GO:0018394) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 36.0 | GO:0005886 | plasma membrane(GO:0005886) |
0.3 | 7.6 | GO:1904949 | ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949) |
0.3 | 6.9 | GO:0009898 | cytoplasmic side of plasma membrane(GO:0009898) cytoplasmic side of membrane(GO:0098562) |
0.2 | 4.7 | GO:1990204 | oxidoreductase complex(GO:1990204) |
0.3 | 3.6 | GO:0055052 | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052) |
0.2 | 2.3 | GO:1990234 | transferase complex(GO:1990234) |
0.5 | 2.1 | GO:0043231 | membrane-bounded organelle(GO:0043227) intracellular membrane-bounded organelle(GO:0043231) |
0.3 | 1.7 | GO:0019898 | extrinsic component of membrane(GO:0019898) |
0.4 | 1.2 | GO:0045274 | respiratory chain complex II(GO:0045273) plasma membrane respiratory chain complex II(GO:0045274) |
0.0 | 1.1 | GO:0044462 | cell outer membrane(GO:0009279) external encapsulating structure part(GO:0044462) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.0 | 8.1 | GO:0005354 | galactose transmembrane transporter activity(GO:0005354) |
2.6 | 7.8 | GO:0015166 | polyol transmembrane transporter activity(GO:0015166) |
0.7 | 7.6 | GO:0043024 | ribosomal small subunit binding(GO:0043024) |
1.6 | 6.6 | GO:0043211 | carbohydrate-transporting ATPase activity(GO:0043211) |
1.2 | 6.2 | GO:0005310 | dicarboxylic acid transmembrane transporter activity(GO:0005310) fumarate transmembrane transporter activity(GO:0015138) succinate transmembrane transporter activity(GO:0015141) C4-dicarboxylate transmembrane transporter activity(GO:0015556) |
0.7 | 4.8 | GO:0016833 | oxo-acid-lyase activity(GO:0016833) |
0.9 | 4.6 | GO:0016987 | transcription factor activity, core RNA polymerase binding(GO:0000990) core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987) |
1.5 | 4.4 | GO:0015136 | sialic acid transmembrane transporter activity(GO:0015136) |
1.0 | 4.2 | GO:0004333 | fumarate hydratase activity(GO:0004333) |
0.5 | 4.2 | GO:0015145 | monosaccharide transmembrane transporter activity(GO:0015145) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 4.0 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
0.8 | 2.4 | PID CERAMIDE PATHWAY | Ceramide signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 3.6 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
0.4 | 1.2 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
0.1 | 0.3 | REACTOME PURINE METABOLISM | Genes involved in Purine metabolism |