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GSE67402: E.coli regulatory changes under long-term starvation
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Results for CaiF
Z-value: 0.77
Transcription factors associated with CaiF
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
caiF
|
caiF | CaiF transcriptional activator |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| caiF | -0.36 | 6.3e-02 | Click! |
Activity profile of CaiF motif
Sorted Z-values of CaiF motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| fixABCX | 15.81 |
fixC
fixB
fixA
fixX
|
flavoprotein (electron transport), possibly involved in anaerobic carnitine metabolism predicted electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like predicted elecron transfer flavoprotein subunit, ETFP adenine nucleotide-binding domain putative ferredoxin possibly involved in anaerobic carnitine metabolism |
|
| caiTABCDE | 10.22 |
caiT
caiE
caiD
caiC
caiB
caiA
|
L-carnitine : γ-butyrobetaine antiporter predicted acyl transferase crotonobetainyl-CoA hydratase carnitine-CoA ligase γ-butyrobetainyl-CoA:carnitine CoA transferase crotonobetainyl-CoA reductase |
Network of associatons between targets according to the STRING database.
First level regulatory network of CaiF
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 8.7 | 26.0 | GO:0009437 | carnitine metabolic process(GO:0009437) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 15.8 | GO:0005829 | cytosol(GO:0005829) |
| 0.0 | 10.2 | GO:0016021 | integral component of membrane(GO:0016021) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.4 | 10.2 | GO:0015199 | amino-acid betaine transmembrane transporter activity(GO:0015199) quaternary ammonium group transmembrane transporter activity(GO:0015651) |
| 1.8 | 15.8 | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors(GO:0016645) |