GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
cra | 0.89 | 4.5e-10 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
gapA Show fit | 65.64 |
glyceraldehyde 3-phosphate dehydrogenase |
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eno Show fit | 48.42 |
enolase |
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gapA-yeaD Show fit | 36.22 |
glyceraldehyde 3-phosphate dehydrogenase conserved protein |
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adhE Show fit | 28.51 |
aldehyde-alcohol dehydrogenase |
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epd-pgk-fbaA Show fit | 26.50 |
erythrose 4-phosphate dehydrogenase phosphoglycerate kinase fructose bisphosphate aldolase class II |
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acnB Show fit | 24.66 |
bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase |
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crp Show fit | 24.37 |
CRP transcriptional dual regulator |
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icd Show fit | 23.86 |
isocitrate dehydrogenase |
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ppc Show fit | 20.93 |
phosphoenolpyruvate carboxylase |
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tpiA Show fit | 18.10 |
triosephosphate isomerase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
13.0 | 220.9 | GO:0006096 | glycolytic process(GO:0006096) |
9.5 | 28.5 | GO:0006067 | ethanol metabolic process(GO:0006067) |
6.1 | 24.4 | GO:0007584 | response to nutrient(GO:0007584) |
2.2 | 24.4 | GO:0022900 | electron transport chain(GO:0022900) |
8.3 | 16.6 | GO:0006103 | 2-oxoglutarate metabolic process(GO:0006103) |
5.5 | 16.6 | GO:0015755 | fructose transport(GO:0015755) |
5.5 | 16.5 | GO:0000920 | cell separation after cytokinesis(GO:0000920) |
5.1 | 15.4 | GO:0019626 | short-chain fatty acid catabolic process(GO:0019626) |
4.9 | 14.7 | GO:0015707 | nitrite transport(GO:0015707) |
5.6 | 11.2 | GO:0031329 | regulation of glucose metabolic process(GO:0010906) regulation of cellular catabolic process(GO:0031329) regulation of cellular carbohydrate catabolic process(GO:0043471) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 220.5 | GO:0005829 | cytosol(GO:0005829) |
16.1 | 48.4 | GO:0005856 | cytoskeleton(GO:0005856) |
3.3 | 26.5 | GO:0005618 | cell wall(GO:0005618) |
1.2 | 22.6 | GO:0019897 | extrinsic component of plasma membrane(GO:0019897) |
0.8 | 16.6 | GO:1990204 | oxidoreductase complex(GO:1990204) |
1.6 | 16.5 | GO:0032153 | cell division site(GO:0032153) |
0.2 | 14.7 | GO:0043234 | protein complex(GO:0043234) |
0.2 | 11.1 | GO:0005737 | cytoplasm(GO:0005737) |
3.5 | 10.5 | GO:0070069 | cytochrome complex(GO:0070069) |
1.7 | 10.1 | GO:0061695 | transferase complex, transferring phosphorus-containing groups(GO:0061695) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
36.2 | 144.7 | GO:0043891 | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity(GO:0004365) glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity(GO:0043891) |
1.8 | 68.5 | GO:0016836 | hydro-lyase activity(GO:0016836) |
2.4 | 33.2 | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor(GO:0016620) |
1.6 | 23.9 | GO:0051287 | NAD binding(GO:0051287) |
7.2 | 21.5 | GO:0008443 | phosphofructokinase activity(GO:0008443) |
1.3 | 18.1 | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses(GO:0016861) |
2.8 | 16.6 | GO:0031405 | lipoic acid binding(GO:0031405) |
3.3 | 16.5 | GO:0016868 | intramolecular transferase activity, phosphotransferases(GO:0016868) |
0.9 | 16.0 | GO:0016831 | carboxy-lyase activity(GO:0016831) |
4.9 | 14.7 | GO:0015113 | ferrochelatase activity(GO:0004325) nitrite transmembrane transporter activity(GO:0015113) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.9 | 5.7 | NABA MATRISOME | Ensemble of genes encoding extracellular matrix and extracellular matrix-associated proteins |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
6.1 | 24.4 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
3.7 | 11.1 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |