GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
csgD Links RegulonDB EcoCyc	csgD	CsgD DNA-binding transcriptional dual regulator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
csgD		-0.14	4.8e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
wrbA-yccJ Show fit	11.25		wrbA Links RegulonDB EcoCyc Show fit yccJ Links RegulonDB EcoCyc Show fit	NAD(P)H:quinone oxidoreductase predicted protein
iraP Show fit	4.83		iraP Links RegulonDB EcoCyc Show fit	anti-adaptor protein for σS stabilization
dgcC Show fit	4.65		dgcC Links RegulonDB EcoCyc Show fit	diguanylate cyclase
fliFGHIJK Show fit	2.18		fliI Links RegulonDB EcoCyc Show fit fliH Links RegulonDB EcoCyc Show fit fliK Links RegulonDB EcoCyc Show fit fliJ Links RegulonDB EcoCyc Show fit fliG Links RegulonDB EcoCyc Show fit fliF Links RegulonDB EcoCyc Show fit	flagellum-specific ATP synthase FliI flagellar biosynthesis protein FliH flagellar hook-length control protein FliK flagellar biosynthesis protein FliJ flagellar motor switch protein FliG flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein
yccT Show fit	2.12		yccT Links RegulonDB EcoCyc Show fit	conserved protein
yhbTS Show fit	0.70		yhbT Links RegulonDB EcoCyc Show fit yhbS Links RegulonDB EcoCyc Show fit	predicted lipid carrier protein predicted acyltransferase with acyl-CoA N-acyltransferase domain

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.6	4.8	GO:0042177	negative regulation of catabolic process(GO:0009895) regulation of protein catabolic process(GO:0042176) negative regulation of protein catabolic process(GO:0042177)
0.4	11.3	GO:0051262	protein tetramerization(GO:0051262) protein homotetramerization(GO:0051289)
0.3	2.2	GO:0044781	bacterial-type flagellum assembly(GO:0044780) bacterial-type flagellum organization(GO:0044781)
0.2	0.7	GO:0006473	protein acetylation(GO:0006473)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.5	2.2	GO:0044461	bacterial-type flagellum part(GO:0044461) cell projection part(GO:0044463)
0.0	9.5	GO:0005829	cytosol(GO:0005829)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.3	11.3	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor(GO:0016655)
1.2	4.8	GO:0043856	anti-sigma factor antagonist activity(GO:0043856)
1.2	4.6	GO:0052621	diguanylate cyclase activity(GO:0052621)
0.0	0.7	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups(GO:0016747)