GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
cueR Links RegulonDB EcoCyc	cueR	CueR transcriptional dual regulator

Promoter	Log-likelihood	Transcript	Gene	Gene Info
copA Show fit	43.13		copA Links RegulonDB EcoCyc Show fit	Cu+ export ATPase
cueO Show fit	36.82		cueO Links RegulonDB EcoCyc Show fit	cuprous oxidase / multicopper oxidase with role in copper homeostasis

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
26.7	80.0	GO:0010273	detoxification of copper ion(GO:0010273) detoxification of inorganic compound(GO:0061687)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.4	36.8	GO:0030288	outer membrane-bounded periplasmic space(GO:0030288)
0.2	43.1	GO:0005887	integral component of plasma membrane(GO:0005887)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
14.4	43.1	GO:0015662	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism(GO:0015662)
12.3	36.8	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors(GO:0016679) oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) oxidoreductase activity, oxidizing metal ions(GO:0016722)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
14.4	43.1	PID CMYB PATHWAY	C-MYB transcription factor network