GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
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Gene Symbol	Gene ID	Gene Info
cysB Links RegulonDB EcoCyc	cysB	CysB transcriptional dual regulator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
cysB		0.72	2.5e-05	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
cysJIH Show fit	48.52		cysI Links RegulonDB EcoCyc Show fit cysH Links RegulonDB EcoCyc Show fit cysJ Links RegulonDB EcoCyc Show fit	sulfite reductase, hemoprotein subunit 3'-phospho-adenylylsulfate reductase sulfite reductase, flavoprotein subunit
cysDNC Show fit	47.87		cysD Links RegulonDB EcoCyc Show fit cysN Links RegulonDB EcoCyc Show fit cysC Links RegulonDB EcoCyc Show fit	sulfate adenylyltransferase, CysD subunit sulfate adenylyltransferase, CysN subunit adenylylsulfate kinase
cysPUWAM Show fit	47.76		cysU Links RegulonDB EcoCyc Show fit cysM Links RegulonDB EcoCyc Show fit cysW Links RegulonDB EcoCyc Show fit cysA Links RegulonDB EcoCyc Show fit cysP Links RegulonDB EcoCyc Show fit	sulfate / thiosulfate ABC transporter - membrane subunit cysteine synthase B sulfate / thiosulfate ABC transporter - membrane subunit sulfate / thiosulfate ABC transporter - ATP binding subunit sulfate / thiosulfate ABC transporter - periplasmic binding protein CysP
cysK Show fit	30.83		cysK Links RegulonDB EcoCyc Show fit	O-acetylserine sulfhydrylase A
tauABCD Show fit	22.35		tauB Links RegulonDB EcoCyc Show fit tauC Links RegulonDB EcoCyc Show fit tauA Links RegulonDB EcoCyc Show fit tauD Links RegulonDB EcoCyc Show fit	taurine ABC transporter - ATP binding subunit taurine ABC transporter - membrane subunit taurine ABC transporter - periplasmic binding protein taurine dioxygenase
tcyP Show fit	20.00		tcyP Links RegulonDB EcoCyc Show fit	cystine / cysteine:cation symporter
yciW Show fit	13.56		yciW Links RegulonDB EcoCyc Show fit	predicted oxidoreductase

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
26.2	78.6	GO:0006535	cysteine biosynthetic process from serine(GO:0006535)
5.0	20.0	GO:0000101	sulfur amino acid transport(GO:0000101)
3.7	11.2	GO:0042908	cellular response to sulfate starvation(GO:0009970) xenobiotic transport(GO:0042908)
2.5	96.4	GO:0006790	sulfur compound metabolic process(GO:0006790)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.3	59.0	GO:1904949	ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949)
0.8	79.4	GO:0043234	protein complex(GO:0043234)
0.1	20.0	GO:0005886	plasma membrane(GO:0005886)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
15.7	78.6	GO:0080146	L-cysteine desulfhydrase activity(GO:0080146)
7.4	22.3	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706)
6.7	20.0	GO:0005416	cation:amino acid symporter activity(GO:0005416)
5.3	47.9	GO:0070566	adenylyltransferase activity(GO:0070566)
4.9	48.5	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor(GO:0016671)