GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
ttdR Links RegulonDB EcoCyc	ttdR	Dan transcriptional activator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
ttdR		-0.38	4.8e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
ttdABT Show fit	13.69		ttdA Links RegulonDB EcoCyc Show fit ttdB Links RegulonDB EcoCyc Show fit ttdT Links RegulonDB EcoCyc Show fit	L-tartrate dehydratase, α subunit L-tartrate dehydratase, β subunit tartrate:succinate antiporter
ttdR Show fit	11.50		ttdR Links RegulonDB EcoCyc Show fit	Dan transcriptional activator

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.4	13.7	GO:0042710	biofilm formation(GO:0042710)
0.2	11.5	GO:0051254	positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	13.7	GO:0005886	plasma membrane(GO:0005886)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.9	13.7	GO:0015297	antiporter activity(GO:0015297)
0.2	11.5	GO:0043565	sequence-specific DNA binding(GO:0043565)