GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
dpiA Links RegulonDB EcoCyc	dpiA	DpiA transcriptional dual regulator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
dpiA		-0.38	5.0e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
citCDEFXG Show fit	4.19		citX Links RegulonDB EcoCyc Show fit citC Links RegulonDB EcoCyc Show fit citD Links RegulonDB EcoCyc Show fit citE Links RegulonDB EcoCyc Show fit citF Links RegulonDB EcoCyc Show fit citG Links RegulonDB EcoCyc Show fit	apo-citrate lyase phosphoribosyl-dephospho-CoA transferase citrate lyase synthetase citrate lyase, acyl carrier γ subunit citrate lyase, citryl-ACP lyase β subunit citrate lyase, citrate-ACP transferase α subunit triphosphoribosyl-dephospho-CoA synthase
exuT Show fit	4.05		exuT Links RegulonDB EcoCyc Show fit	hexuronate transporter
dpiBA Show fit	1.52		dpiB Links RegulonDB EcoCyc Show fit dpiA Links RegulonDB EcoCyc Show fit	DpiB sensory histidine kinase DpiA transcriptional dual regulator
appY Show fit	0.86		appY Links RegulonDB EcoCyc Show fit	AppY DNA-binding transcriptional activator

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.4	4.2	GO:0051189	prosthetic group metabolic process(GO:0051189)
0.5	1.5	GO:0071310	cellular response to organic substance(GO:0071310)
0.2	4.0	GO:0015718	monocarboxylic acid transport(GO:0015718) monosaccharide transport(GO:0015749)
0.1	0.9	GO:0016036	cellular response to phosphate starvation(GO:0016036)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	5.6	GO:0005887	integral component of plasma membrane(GO:0005887)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.4	4.2	GO:0051192	prosthetic group binding(GO:0051192)
0.3	4.0	GO:0015145	monocarboxylic acid transmembrane transporter activity(GO:0008028) monosaccharide transmembrane transporter activity(GO:0015145)
0.3	1.5	GO:0000156	phosphorelay response regulator activity(GO:0000156)
0.0	0.9	GO:0003700	transcription factor activity, sequence-specific DNA binding(GO:0003700)