GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
exuR Links RegulonDB EcoCyc	exuR	ExuR DNA-binding transcriptional repressor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
exuR		-0.39	4.5e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
uxaB Show fit	12.76		uxaB Links RegulonDB EcoCyc Show fit	altronate oxidoreductase
exuT Show fit	6.89		exuT Links RegulonDB EcoCyc Show fit	hexuronate transporter
lgoR Show fit	4.23		lgoR Links RegulonDB EcoCyc Show fit	predicted DNA-binding transcriptional regulator
uxuAB Show fit	3.58		uxuA Links RegulonDB EcoCyc Show fit uxuB Links RegulonDB EcoCyc Show fit	D-mannonate dehydratase D-mannonate oxidoreductase
uxaCA Show fit	2.74		uxaA Links RegulonDB EcoCyc Show fit uxaC Links RegulonDB EcoCyc Show fit	D-altronate dehydratase D-glucuronate isomerase/D-galacturonate isomerase
exuR Show fit	1.77		exuR Links RegulonDB EcoCyc Show fit	ExuR DNA-binding transcriptional repressor
uxuR Show fit	1.32		uxuR Links RegulonDB EcoCyc Show fit	UxuR DNA-binding transcriptional repressor

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
6.4	19.1	GO:0006063	uronic acid metabolic process(GO:0006063)
0.5	4.2	GO:0046176	aldonic acid metabolic process(GO:0019520) aldonic acid catabolic process(GO:0046176)
0.4	6.9	GO:0015718	monocarboxylic acid transport(GO:0015718)
0.0	1.8	GO:1902679	negative regulation of transcription, DNA-templated(GO:0045892) negative regulation of RNA biosynthetic process(GO:1902679) negative regulation of nucleic acid-templated transcription(GO:1903507)
0.0	1.3	GO:0097659	transcription, DNA-templated(GO:0006351) nucleic acid-templated transcription(GO:0097659)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	6.9	GO:0005887	integral component of plasma membrane(GO:0005887)
0.0	12.8	GO:0005829	cytosol(GO:0005829)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.6	12.8	GO:0051287	NAD binding(GO:0051287)
0.5	6.9	GO:0015145	monocarboxylic acid transmembrane transporter activity(GO:0008028) monosaccharide transmembrane transporter activity(GO:0015145)
0.4	6.3	GO:0008198	ferrous iron binding(GO:0008198)