GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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fnr | 0.68 | 9.5e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
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rpsJ-rplCDWB-rpsS-rplV-rpsC-rplP-rpmC-rpsQ Show fit | 14.06 |
30S ribosomal subunit protein S3 50S ribosomal subunit protein L22 50S ribosomal subunit protein L23 30S ribosomal subunit protein S10 50S ribosomal subunit protein L16 30S ribosomal subunit protein S19 30S ribosomal subunit protein S17 50S ribosomal subunit protein L29 50S ribosomal subunit protein L4 50S ribosomal subunit protein L2 50S ribosomal subunit protein L3 |
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rpsP-rimM-trmD-rplS Show fit | 13.18 |
50S ribosomal subunit protein L19 ribosome maturation protein tRNA m1G37 methyltransferase 30S ribosomal subunit protein S16 |
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rplM-rpsI Show fit | 13.13 |
50S ribosomal subunit protein L13 30S ribosomal subunit protein S9 |
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nuoABCEFGHIJKLMN Show fit | 9.40 |
NADH:ubiquinone oxidoreductase, chain B NADH:ubiquinone oxidoreductase, chain CD NADH:ubiquinone oxidoreductase, membrane subunit A NADH:ubiquinone oxidoreductase, chain F NADH:ubiquinone oxidoreductase, chain G NADH:ubiquinone oxidoreductase, chain E NADH:ubiquinone oxidoreductase, membrane subunit J NADH:ubiquinone oxidoreductase, membrane subunit K NADH:ubiquinone oxidoreductase, membrane subunit H NADH:ubiquinone oxidoreductase, chain I NADH:ubiquinone oxidoreductase, membrane subunit N NADH:ubiquinone oxidoreductase, membrane subunit L NADH:ubiquinone oxidoreductase, membrane subunit M |
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malPQ Show fit | 9.10 |
maltodextrin phosphorylase amylomaltase/amylomaltase/amylomaltase |
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sucABCD Show fit | 8.96 |
subunit of E1(0) component of 2-oxoglutarate dehydrogenase succinyl-CoA synthetase, β subunit dihydrolipoyltranssuccinylase succinyl-CoA synthetase, α subunit |
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aspC Show fit | 8.87 |
aspartate aminotransferase, PLP-dependent |
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rplT Show fit | 8.69 |
50S ribosomal subunit protein L20 |
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rplT-pheM Show fit | 8.68 |
50S ribosomal subunit protein L20 phenylalanyl-tRNA synthetase (pheST) operon leader peptide |
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aceEF Show fit | 8.42 |
pyruvate dehydrogenase, E2 subunit subunit of E1p component of pyruvate dehydrogenase complex |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.3 | 26.3 | GO:0030490 | maturation of SSU-rRNA(GO:0030490) |
2.2 | 17.4 | GO:0042273 | ribosomal large subunit assembly(GO:0000027) ribosomal large subunit biogenesis(GO:0042273) |
4.9 | 14.6 | GO:0019464 | glycine decarboxylation via glycine cleavage system(GO:0019464) |
4.7 | 14.1 | GO:0060701 | negative regulation of nuclease activity(GO:0032074) negative regulation of ribonuclease activity(GO:0060701) negative regulation of endoribonuclease activity(GO:0060702) |
3.0 | 12.0 | GO:1902600 | hydrogen ion transmembrane transport(GO:1902600) |
3.8 | 11.3 | GO:0035672 | oligopeptide transport(GO:0006857) oligopeptide transmembrane transport(GO:0035672) |
3.0 | 9.1 | GO:0030978 | alpha-glucan metabolic process(GO:0030978) alpha-glucan catabolic process(GO:0030980) |
3.0 | 8.9 | GO:0046417 | chorismate metabolic process(GO:0046417) |
2.8 | 8.5 | GO:0019646 | aerobic electron transport chain(GO:0019646) |
4.2 | 8.4 | GO:0035383 | acyl-CoA metabolic process(GO:0006637) thioester metabolic process(GO:0035383) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.1 | 57.7 | GO:0022625 | large ribosomal subunit(GO:0015934) cytosolic large ribosomal subunit(GO:0022625) |
0.1 | 31.5 | GO:0005829 | cytosol(GO:0005829) |
7.5 | 22.6 | GO:0045252 | tricarboxylic acid cycle enzyme complex(GO:0045239) dihydrolipoyl dehydrogenase complex(GO:0045240) oxoglutarate dehydrogenase complex(GO:0045252) |
0.7 | 10.5 | GO:1990204 | oxidoreductase complex(GO:1990204) |
1.6 | 6.2 | GO:0070469 | respiratory chain(GO:0070469) plasma membrane respiratory chain(GO:0070470) respiratory chain complex(GO:0098803) |
1.8 | 5.3 | GO:0070069 | cytochrome complex(GO:0070069) |
0.4 | 5.0 | GO:0055052 | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052) |
0.3 | 3.7 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
0.8 | 3.2 | GO:0005576 | extracellular region(GO:0005576) |
0.2 | 1.3 | GO:0019897 | extrinsic component of plasma membrane(GO:0019897) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.5 | 43.7 | GO:0070180 | large ribosomal subunit rRNA binding(GO:0070180) |
7.5 | 22.6 | GO:0004149 | dihydrolipoyllysine-residue succinyltransferase activity(GO:0004149) oxoglutarate dehydrogenase (succinyl-transferring) activity(GO:0004591) oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor(GO:0016624) S-succinyltransferase activity(GO:0016751) |
5.5 | 16.6 | GO:0031405 | lipoic acid binding(GO:0031405) |
5.3 | 15.8 | GO:0008137 | NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136) |
4.7 | 14.1 | GO:0030371 | translation repressor activity(GO:0030371) translation regulator activity(GO:0045182) |
2.1 | 10.6 | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638) |
3.0 | 9.1 | GO:0004133 | glycogen debranching enzyme activity(GO:0004133) |
0.5 | 8.9 | GO:0008483 | transaminase activity(GO:0008483) |
1.1 | 8.8 | GO:0008519 | ammonium transmembrane transporter activity(GO:0008519) |
2.7 | 8.1 | GO:0035673 | oligopeptide transporter activity(GO:0015198) oligopeptide transmembrane transporter activity(GO:0035673) |
Log-likelihood per target | Total log-likelihood | Term | Description |
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2.0 | 6.1 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |