GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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fis | -0.89 | 6.6e-10 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
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rrsE-gltV-rrlE-rrfE Show fit | 24.35 |
rrlE 23S ribosomal RNA tRNAgltV rrsE 16S ribosomal RNA rrfE 5S ribosomal RNA |
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argW Show fit | 22.79 |
tRNAargW |
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rrsB-gltT-rrlB-rrfB Show fit | 21.37 |
rrlB 23S ribosomal RNA tRNAgltT rrfB 5S ribosomal RNA rrsB 16S ribosomal RNA |
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glpABC Show fit | 20.95 |
anaerobic glycerol-3-phosphate dehydrogenase subunit A anaerobic glycerol-3-phosphate dehydrogenase subunit C anaerobic glycerol-3-phosphate dehydrogenase subunit B |
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rrsA-ileT-alaT-rrlA-rrfA Show fit | 20.80 |
23S ribosomal RNA (rrlA) tRNAileT tRNAalaT 16S ribosomal RNA (rrsA) 5S ribosomal RNA (rrfA) |
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rrsC-gltU-rrlC-rrfC Show fit | 20.19 |
rrlC 23S ribosomal RNA tRNAgltU rrfC 5S ribosomal RNA rrsC 16S ribosomal RNA |
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ssrS Show fit | 20.12 |
6S RNA |
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ssrS-fau Show fit | 20.10 |
6S RNA 5-formyltetrahydrofolate cyclo-ligase |
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leuX Show fit | 20.02 |
tRNAleuX |
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rrsG-gltW-rrlG-rrfG Show fit | 19.73 |
rrlG 23S ribosomal RNA tRNAgltW rrfG 5S ribosomal RNA rrsG 16S ribosomal RNA |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
7.4 | 29.6 | GO:0019262 | N-acetylneuraminate metabolic process(GO:0006054) N-acetylneuraminate catabolic process(GO:0019262) |
6.7 | 20.1 | GO:0035999 | tetrahydrofolate interconversion(GO:0035999) |
3.2 | 19.3 | GO:0006598 | polyamine catabolic process(GO:0006598) putrescine catabolic process(GO:0009447) |
0.6 | 18.3 | GO:0042710 | biofilm formation(GO:0042710) |
5.1 | 15.4 | GO:0031119 | pseudouridine synthesis(GO:0001522) tRNA pseudouridine synthesis(GO:0031119) RNA 3'-end processing(GO:0031123) |
2.4 | 14.4 | GO:0031564 | transcription antitermination(GO:0031564) |
1.2 | 13.4 | GO:0046434 | organophosphate catabolic process(GO:0046434) |
3.8 | 11.5 | GO:0015707 | nitrite transport(GO:0015707) |
3.0 | 8.9 | GO:0019407 | hexitol metabolic process(GO:0006059) hexitol catabolic process(GO:0019407) |
3.0 | 8.9 | GO:0071941 | nitrogen cycle metabolic process(GO:0071941) |
Log-likelihood per target | Total log-likelihood | Term | Description |
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0.1 | 9.9 | GO:0042597 | periplasmic space(GO:0042597) |
3.0 | 8.9 | GO:0031235 | intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235) |
2.1 | 8.2 | GO:0005576 | extracellular region(GO:0005576) |
2.1 | 6.4 | GO:0031237 | intrinsic component of periplasmic side of plasma membrane(GO:0031237) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
6.0 | 29.9 | GO:0097216 | guanosine tetraphosphate binding(GO:0097216) |
7.0 | 20.9 | GO:0016901 | oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor(GO:0016901) |
5.0 | 20.1 | GO:0016882 | cyclo-ligase activity(GO:0016882) |
1.1 | 19.3 | GO:0008483 | transaminase activity(GO:0008483) |
3.7 | 18.3 | GO:0004333 | fumarate hydratase activity(GO:0004333) |
2.1 | 17.0 | GO:0016833 | oxo-acid-lyase activity(GO:0016833) |
4.2 | 12.7 | GO:0015136 | sialic acid transmembrane transporter activity(GO:0015136) |
3.8 | 11.5 | GO:0015113 | nitrite transmembrane transporter activity(GO:0015113) |
3.5 | 10.6 | GO:0016635 | oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor(GO:0016635) |
2.2 | 8.9 | GO:0016530 | nitrate reductase activity(GO:0008940) metallochaperone activity(GO:0016530) |
Log-likelihood per target | Total log-likelihood | Term | Description |
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9.2 | 36.8 | REACTOME INFLUENZA LIFE CYCLE | Genes involved in Influenza Life Cycle |
5.1 | 15.4 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |