GSE67402: E.coli regulatory changes under long-term starvation
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
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flgBCDEFGHIJ Show fit | 33.15 |
flagellar basal-body rod protein FlgC flagellar basal-body rod protein FlgB flagellar basal-body rod protein FlgG flagellar basal-body rod protein FlgF flagellar hook protein FlgE flagellar biosynthesis, initiation of hook assembly FlgJ flagellar P-ring protein FlgI flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein |
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flgKL Show fit | 21.98 |
flagellar biosynthesis, hook-filament junction protein 1 flagellar biosynthesis; hook-filament junction protein |
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flhBAE Show fit | 18.93 |
flagellar biosynthesis protein FlhB flagellar biosynthesis protein FlhA flagellar protein |
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flgAMN Show fit | 17.91 |
flagellar biosynthesis; assembly of basal-body periplasmic P ring flagellar biosynthesis protein FlgN anti-sigma factor for FliA (σ28) |
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yecR Show fit | 14.55 |
predicted protein |
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mdh Show fit | 10.98 |
malate dehydrogenase |
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napFDAGHBC-ccmABCDEFGH Show fit | 4.37 |
ferredoxin-type protein ferredoxin-type protein signal peptide-binding chaperone for NapA periplasmic nitrate reductase, cytochrome c protein holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmH large subunit of periplasmic nitrate reductase, molybdoprotein membrane anchored periplasmic heme chaperone CcmE ABC complex for formation and release of holoCcmE - membrane subunit CcmD holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmG holocytochrome c synthetase - CcmF subunit ABC complex for formation and release of holoCcmE - ATP binding subunit ABC complex for formation and release of holoCcmE - membrane subunit CcmC ABC complex for formation and release of holoCcmE - membrane subunit CcmB ferredoxin-type protein subunit of periplasmic nitrate reductase, cytochrome c550 protein |
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mglBAC Show fit | 2.96 |
D-galactose / D-galactoside ABC transporter - ATP binding subunit D-galactose / D-galactoside ABC transporter - periplasmic binding protein D-galactose / D-galactoside ABC transporter - membrane subunit |
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nrfABCDEFG Show fit | 2.62 |
activator of formate-dependent nitrite reductase complex NrfG formate dependent nitrite reductase - NrfD subunit formate-dependent nitrite reductase; possible assembly function formate-dependent nitrite reductase - penta-heme cytochrome c formate-dependent nitrite reductase, 4Fe-4S subunit formate dependent nitrite reductase - NrfA subunit |
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ppdAB-ygdB-ppdC-recC Show fit | 2.00 |
conserved protein conserved protein predicted protein predicted protein RecC |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.8 | 30.7 | GO:0044781 | bacterial-type flagellum assembly(GO:0044780) bacterial-type flagellum organization(GO:0044781) |
3.8 | 22.9 | GO:0071978 | bacterial-type flagellum-dependent swarming motility(GO:0071978) |
3.0 | 17.9 | GO:0030162 | regulation of proteolysis(GO:0030162) |
3.7 | 11.0 | GO:0006108 | malate metabolic process(GO:0006108) |
2.3 | 7.0 | GO:0018063 | protein-heme linkage(GO:0017003) protein-tetrapyrrole linkage(GO:0017006) cytochrome c-heme linkage(GO:0018063) |
1.0 | 3.0 | GO:0015765 | methylgalactoside transport(GO:0015765) |
0.7 | 2.0 | GO:0044355 | clearance of foreign intracellular DNA(GO:0044355) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.3 | 21.3 | GO:0009288 | bacterial-type flagellum(GO:0009288) |
0.6 | 11.0 | GO:0019898 | extrinsic component of membrane(GO:0019898) |
1.5 | 4.4 | GO:0031235 | intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235) |
0.7 | 2.0 | GO:0009338 | exodeoxyribonuclease V complex(GO:0009338) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.2 | 17.9 | GO:0016989 | sigma factor antagonist activity(GO:0016989) |
1.5 | 4.4 | GO:0005048 | signal sequence binding(GO:0005048) |
1.0 | 3.0 | GO:0015592 | methylgalactoside transmembrane transporter activity(GO:0015592) |
0.7 | 2.6 | GO:0016662 | oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor(GO:0016662) |
0.7 | 2.0 | GO:0008854 | exodeoxyribonuclease V activity(GO:0008854) |