GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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fur | 0.47 | 1.3e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
cirA Show fit | 36.29 |
outer membrane receptor involved in uptake of ferric dihyroxybenzoylserine |
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fepA-entD Show fit | 22.12 |
ferric enterobactin / colicin B / colicin D outer membrane porin FepA phosphopantetheinyl transferase/phosphopantetheinyl transferase |
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entCEBAH Show fit | 21.95 |
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase proofreading thioesterase in enterobactin biosynthesis isochorismate synthase 1 EntB 2,3-dihydroxybenzoate-AMP ligase |
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fes-ybdZ-entF-fepE Show fit | 17.28 |
MbtH-like protein that enhances the catalytic function of EntF enterochelin esterase ferric enterobactin (enterochelin) transport apo-serine activating enzyme |
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ompF Show fit | 16.41 |
outer membrane porin F |
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aspC Show fit | 16.01 |
aspartate aminotransferase, PLP-dependent |
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yjjZ Show fit | 15.48 |
predicted protein |
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ryhB Show fit | 14.73 |
RyhB |
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fhuE Show fit | 14.44 |
ferric coprogen outer membrane porin FhuE |
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fecABCDE Show fit | 12.77 |
ferric citrate ABC transporter - membrane subunit ferric citrate ABC transporter - ATP binding subunit ferric citrate ABC transporter - periplasmic binding protein ferric citrate ABC transporter - membrane subunit ferric citrate outer membrane porin FecA |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
20.5 | 61.4 | GO:0009712 | siderophore metabolic process(GO:0009237) enterobactin metabolic process(GO:0009238) enterobactin biosynthetic process(GO:0009239) catechol-containing compound metabolic process(GO:0009712) catechol-containing compound biosynthetic process(GO:0009713) nonribosomal peptide biosynthetic process(GO:0019184) siderophore biosynthetic process(GO:0019290) siderophore biosynthetic process from catechol(GO:0019540) phenol-containing compound biosynthetic process(GO:0046189) |
11.9 | 47.4 | GO:0033212 | iron assimilation(GO:0033212) |
7.9 | 39.5 | GO:0072512 | ferric iron transport(GO:0015682) trivalent inorganic cation transport(GO:0072512) |
1.8 | 16.4 | GO:0006855 | drug transmembrane transport(GO:0006855) |
5.3 | 16.0 | GO:0046417 | chorismate metabolic process(GO:0046417) |
3.0 | 11.9 | GO:0019646 | aerobic electron transport chain(GO:0019646) |
3.2 | 9.6 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
3.0 | 9.0 | GO:0006801 | response to superoxide(GO:0000303) superoxide metabolic process(GO:0006801) |
1.8 | 9.0 | GO:0050821 | protein stabilization(GO:0050821) |
2.2 | 6.6 | GO:0019464 | glycine decarboxylation via glycine cleavage system(GO:0019464) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.6 | 73.6 | GO:0009279 | cell outer membrane(GO:0009279) |
0.1 | 51.9 | GO:0005829 | cytosol(GO:0005829) |
0.7 | 29.5 | GO:0098797 | plasma membrane protein complex(GO:0098797) |
3.2 | 22.1 | GO:0045203 | integral component of cell outer membrane(GO:0045203) |
3.3 | 16.4 | GO:0046930 | pore complex(GO:0046930) |
0.8 | 13.2 | GO:1990204 | oxidoreductase complex(GO:1990204) |
0.2 | 11.8 | GO:0043234 | protein complex(GO:0043234) |
1.8 | 5.4 | GO:0045239 | tricarboxylic acid cycle enzyme complex(GO:0045239) dihydrolipoyl dehydrogenase complex(GO:0045240) oxoglutarate dehydrogenase complex(GO:0045252) respiratory chain complex II(GO:0045273) plasma membrane respiratory chain complex II(GO:0045274) |
2.2 | 4.4 | GO:0070069 | cytochrome complex(GO:0070069) |
0.5 | 1.9 | GO:0005576 | extracellular region(GO:0005576) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
24.9 | 74.8 | GO:0022885 | bacteriocin transmembrane transporter activity(GO:0022885) colicin transmembrane transporter activity(GO:0042912) |
9.0 | 27.0 | GO:0015603 | iron chelate transmembrane transporter activity(GO:0015603) |
7.3 | 22.0 | GO:0016803 | CoA hydrolase activity(GO:0016289) thiolester hydrolase activity(GO:0016790) hydrolase activity, acting on ether bonds(GO:0016801) ether hydrolase activity(GO:0016803) |
10.4 | 20.7 | GO:0015620 | ferric-enterobactin transmembrane transporter activity(GO:0015620) |
9.1 | 18.1 | GO:0031992 | energy transducer activity(GO:0031992) |
0.9 | 16.0 | GO:0008483 | transaminase activity(GO:0008483) |
2.6 | 15.4 | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638) |
0.8 | 10.5 | GO:0051537 | 2 iron, 2 sulfur cluster binding(GO:0051537) |
3.2 | 9.7 | GO:0048039 | quinone binding(GO:0048038) ubiquinone binding(GO:0048039) |
3.0 | 9.0 | GO:0004784 | superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.8 | 17.3 | PID ANGIOPOIETIN RECEPTOR PATHWAY | Angiopoietin receptor Tie2-mediated signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.8 | 17.3 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
1.8 | 5.4 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |