GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
gadE | 0.61 | 7.8e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
lrp Show fit | 45.59 |
Lrp transcriptional dual regulator |
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skp-lpxD-fabZ-lpxA Show fit | 25.61 |
UDP-N-acetylglucosamine acyltransferase UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase periplasmic chaperone 3-hydroxy-acyl-[acyl-carrier-protein] dehydratase |
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gltBDF Show fit | 25.14 |
glutamate synthase, large subunit glutamate synthase, small subunit periplasmic protein |
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purA Show fit | 14.32 |
adenylosuccinate synthetase |
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gnd Show fit | 13.09 |
6-phosphogluconate dehydrogenase, decarboxylating |
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cyoABCDE Show fit | 10.98 |
cytochrome bo terminal oxidase subunit II cytochrome bo terminal oxidase subunit III cytochrome bo terminal oxidase subunit I heme O synthase cytochrome bo terminal oxidase subunit IV |
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gadE-mdtEF Show fit | 4.64 |
MdtEF-TolC multidrug efflux pump - permease subunit MdtEF-TolC multidrug efflux pump - membrane fusion protein GadE DNA-binding transcriptional activator |
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hdeAB-yhiD Show fit | 2.09 |
inner membrane protein YhiD HdeB monomer HdeA monomer, chaperone active form |
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gadXW Show fit | 0.12 |
GadW DNA-binding transcriptional dual regulator GadX DNA-binding transcriptional dual regulator |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
9.1 | 45.6 | GO:0009078 | alanine metabolic process(GO:0006522) leucine metabolic process(GO:0006551) pyruvate family amino acid metabolic process(GO:0009078) leucine biosynthetic process(GO:0009098) response to amino acid(GO:0043200) |
8.5 | 25.6 | GO:0032978 | protein insertion into membrane from inner side(GO:0032978) |
8.4 | 25.1 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
3.6 | 14.3 | GO:0046040 | IMP metabolic process(GO:0046040) |
2.6 | 13.1 | GO:0019521 | D-gluconate metabolic process(GO:0019521) D-gluconate catabolic process(GO:0046177) |
2.7 | 11.0 | GO:1902600 | aerobic electron transport chain(GO:0019646) hydrogen ion transmembrane transport(GO:1902600) |
0.5 | 4.6 | GO:0006855 | drug transmembrane transport(GO:0006855) |
0.4 | 2.1 | GO:0071468 | cellular response to acidic pH(GO:0071468) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 66.4 | GO:0005829 | cytosol(GO:0005829) |
0.5 | 52.8 | GO:0030288 | outer membrane-bounded periplasmic space(GO:0030288) |
3.7 | 11.0 | GO:0070069 | cytochrome complex(GO:0070069) |
0.0 | 4.6 | GO:0031226 | intrinsic component of plasma membrane(GO:0031226) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 44.8 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
8.5 | 25.6 | GO:0047451 | 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity(GO:0008693) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity(GO:0019171) 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity(GO:0047451) |
4.2 | 25.1 | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638) |
0.5 | 14.3 | GO:0016879 | ligase activity, forming carbon-nitrogen bonds(GO:0016879) |
0.3 | 13.1 | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0016616) |
2.7 | 11.0 | GO:0048038 | prenyltransferase activity(GO:0004659) quinone binding(GO:0048038) ubiquinone binding(GO:0048039) |
0.4 | 4.6 | GO:0015238 | drug transmembrane transporter activity(GO:0015238) |
0.7 | 2.1 | GO:0051087 | chaperone binding(GO:0051087) |