GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
gadW Links RegulonDB EcoCyc	gadW	GadW DNA-binding transcriptional dual regulator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
gadW		-0.10	6.2e-01	Click!
gadX		-0.09	6.5e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
gadY Show fit	2.56		gadY Links RegulonDB EcoCyc Show fit	GadY
gadX Show fit	0.96		gadX Links RegulonDB EcoCyc Show fit	GadX DNA-binding transcriptional dual regulator
gadBC Show fit	0.85		gadB Links RegulonDB EcoCyc Show fit gadC Links RegulonDB EcoCyc Show fit	glutamate decarboxylase B subunit glutamic acid:4-aminobutyrate antiporter
gadXW Show fit	0.84		gadW Links RegulonDB EcoCyc Show fit gadX Links RegulonDB EcoCyc Show fit	GadW DNA-binding transcriptional dual regulator GadX DNA-binding transcriptional dual regulator
slp-dctR Show fit	0.73		slp Links RegulonDB EcoCyc Show fit dctR Links RegulonDB EcoCyc Show fit	starvation lipoprotein predicted DNA-binding transcriptional regulator
gadW Show fit	0.54		gadW Links RegulonDB EcoCyc Show fit	GadW DNA-binding transcriptional dual regulator
gadE-mdtEF Show fit	0.07		mdtF Links RegulonDB EcoCyc Show fit mdtE Links RegulonDB EcoCyc Show fit gadE Links RegulonDB EcoCyc Show fit	MdtEF-TolC multidrug efflux pump - permease subunit MdtEF-TolC multidrug efflux pump - membrane fusion protein GadE DNA-binding transcriptional activator

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.7	GO:0043471	regulation of cellular catabolic process(GO:0031329) regulation of cellular carbohydrate catabolic process(GO:0043471)
0.2	0.7	GO:0051454	pH elevation(GO:0045852) intracellular pH elevation(GO:0051454)
0.0	1.8	GO:0051254	positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508)
0.0	0.1	GO:0006855	drug transmembrane transport(GO:0006855)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.7	GO:0019867	outer membrane(GO:0019867)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	1.7	GO:0001140	transcriptional activator activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding(GO:0001140)
0.1	0.9	GO:0015297	antiporter activity(GO:0015297)