GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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hns | -0.84 | 4.3e-08 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
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cydAB Show fit | 87.20 |
cytochrome bd-I terminal oxidase subunit I cytochrome bd-I terminal oxidase subunit II |
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gspAB Show fit | 42.64 |
calcium-binding protein required for initiation of chromosome replication general secretory pathway component, cryptic |
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ssrS Show fit | 42.28 |
6S RNA |
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ssrS-fau Show fit | 42.25 |
6S RNA 5-formyltetrahydrofolate cyclo-ligase |
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gspCDEFGHIJKLMO Show fit | 36.78 |
putative protein secretion protein for export putative protein secretion protein for export putative protein secretion protein for export putative protein secretion protein for export putative protein secretion protein for export putative protein secretion protein for export putative protein secretion protein for export putative protein secretion protein for export putative protein secretion protein for export leader peptidase, integral membrane protein putative protein secretion protein for export putative protein secretion protein |
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rrsB-gltT-rrlB-rrfB Show fit | 31.89 |
rrlB 23S ribosomal RNA tRNAgltT rrfB 5S ribosomal RNA rrsB 16S ribosomal RNA |
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rrsC-gltU-rrlC-rrfC Show fit | 29.38 |
rrlC 23S ribosomal RNA tRNAgltU rrfC 5S ribosomal RNA rrsC 16S ribosomal RNA |
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rrsG-gltW-rrlG-rrfG Show fit | 28.91 |
rrlG 23S ribosomal RNA tRNAgltW rrfG 5S ribosomal RNA rrsG 16S ribosomal RNA |
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hdeD Show fit | 27.10 |
acid-resistance membrane protein |
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cadC Show fit | 24.82 |
CadC DNA-binding transcriptional activator |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
21.8 | 87.2 | GO:0019646 | aerobic electron transport chain(GO:0019646) |
1.5 | 79.2 | GO:1903508 | positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508) |
14.1 | 42.2 | GO:0035999 | tetrahydrofolate interconversion(GO:0035999) |
5.3 | 36.8 | GO:0071806 | protein transmembrane transport(GO:0071806) |
10.2 | 30.6 | GO:0009437 | carnitine metabolic process(GO:0009437) |
7.0 | 28.1 | GO:1901654 | response to methylglyoxal(GO:0051595) response to ketone(GO:1901654) |
7.3 | 21.8 | GO:0031346 | positive regulation of cell projection organization(GO:0031346) |
5.3 | 21.3 | GO:0009607 | defense response(GO:0006952) response to biotic stimulus(GO:0009607) response to virus(GO:0009615) response to external biotic stimulus(GO:0043207) response to other organism(GO:0051707) RNA phosphodiester bond hydrolysis(GO:0090501) |
2.4 | 21.2 | GO:0006855 | drug transmembrane transport(GO:0006855) |
6.2 | 18.5 | GO:0006527 | arginine catabolic process(GO:0006527) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 178.2 | GO:0005886 | plasma membrane(GO:0005886) |
29.1 | 87.2 | GO:0070069 | cytochrome complex(GO:0070069) |
4.6 | 18.3 | GO:0043227 | membrane-bounded organelle(GO:0043227) intracellular membrane-bounded organelle(GO:0043231) |
2.5 | 17.8 | GO:0042995 | cell projection(GO:0042995) |
3.3 | 13.3 | GO:0005576 | extracellular region(GO:0005576) |
0.2 | 9.5 | GO:0042597 | periplasmic space(GO:0042597) |
0.2 | 5.5 | GO:0019867 | outer membrane(GO:0019867) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
29.1 | 87.2 | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors(GO:0016679) oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) |
1.2 | 81.1 | GO:0003700 | transcription factor activity, sequence-specific DNA binding(GO:0003700) |
10.6 | 42.2 | GO:0016882 | cyclo-ligase activity(GO:0016882) |
4.4 | 21.8 | GO:0001141 | transcriptional repressor activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding(GO:0001141) bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding(GO:0001217) |
5.3 | 21.3 | GO:0008821 | crossover junction endodeoxyribonuclease activity(GO:0008821) endodeoxyribonuclease activity, producing 3'-phosphomonoesters(GO:0016889) |
0.6 | 20.3 | GO:0008233 | peptidase activity(GO:0008233) |
1.0 | 18.5 | GO:0016831 | carboxy-lyase activity(GO:0016831) |
6.1 | 18.3 | GO:0016413 | O-acetyltransferase activity(GO:0016413) oligosaccharide binding(GO:0070492) |
4.4 | 17.8 | GO:0044183 | protein binding involved in protein folding(GO:0044183) |
0.5 | 16.1 | GO:0016836 | hydro-lyase activity(GO:0016836) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
14.1 | 42.2 | REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX | Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex |
1.4 | 14.2 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |
2.3 | 2.3 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |