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GSE67402: E.coli regulatory changes under long-term starvation
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Results for HcaR
Z-value: 0.43
Transcription factors associated with HcaR
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
hcaR
|
hcaR | HcaR transcriptional dual regulator |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| hcaR | 0.23 | 2.5e-01 | Click! |
Activity profile of HcaR motif
Sorted Z-values of HcaR motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| hcaR | 6.00 |
hcaR
|
HcaR transcriptional dual regulator |
|
| hcaEFCBD | 3.84 |
hcaD
hcaE
hcaF
hcaB
hcaC
|
3-phenylpropionate dioxygenase, predicted ferredoxin reductase subunit 3-phenylpropionate dioxygenase, α subunit 3-phenylpropionate dioxygenase, β subunit 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase 3-phenylpropionate dioxygenase, predicted ferredoxin subunit |
Network of associatons between targets according to the STRING database.
First level regulatory network of HcaR
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 3.8 | GO:0042178 | xenobiotic catabolic process(GO:0042178) |
| 0.1 | 6.0 | GO:0051254 | positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 3.8 | GO:0051537 | 2 iron, 2 sulfur cluster binding(GO:0051537) |
| 0.1 | 6.0 | GO:0003700 | transcription factor activity, sequence-specific DNA binding(GO:0003700) |