GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
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Gene Symbol	Gene ID	Gene Info
hipB Links RegulonDB EcoCyc	hipB	antitoxin DNA-binding transcriptional repressor HipB
hipA Links RegulonDB EcoCyc	hipA	serine threonine-protein kinase toxin HipA

Gene	Promoter	Pearson corr. coef.	P-value	Plot
hipA		0.54	3.5e-03	Click!
hipB		0.54	3.5e-03	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
hipBA Show fit	1.67		hipA Links RegulonDB EcoCyc Show fit hipB Links RegulonDB EcoCyc Show fit	serine/threonine kinase HipA HipB antitoxin and DNA-binding transcriptional repressor
relA-mazEF Show fit	0.14		mazE Links RegulonDB EcoCyc Show fit relA Links RegulonDB EcoCyc Show fit mazF Links RegulonDB EcoCyc Show fit	MazE antitoxin of the MazF-MazE toxin-antitoxin system GDP pyrophosphokinase/GTP pyrophosphokinase MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	1.7	GO:0022611	dormancy process(GO:0022611) peptidyl-serine autophosphorylation(GO:0036289)
0.0	0.1	GO:0034661	guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035) ncRNA catabolic process(GO:0034661)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005618	cell wall(GO:0005618)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	1.7	GO:0000984	bacterial-type RNA polymerase regulatory region sequence-specific DNA binding(GO:0000984) bacterial-type RNA polymerase regulatory region DNA binding(GO:0001017) protein kinase activity(GO:0004672)
0.0	0.1	GO:0016794	GTP diphosphokinase activity(GO:0008728) guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity(GO:0008893) diphosphoric monoester hydrolase activity(GO:0016794)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	PID ANGIOPOIETIN RECEPTOR PATHWAY	Angiopoietin receptor Tie2-mediated signaling

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME DEVELOPMENTAL BIOLOGY	Genes involved in Developmental Biology