GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
hypT Links RegulonDB EcoCyc	hypT	HypT transcriptional dual regulator

Promoter	Log-likelihood	Transcript	Gene	Gene Info
cysH Show fit	37.56		cysH Links RegulonDB EcoCyc Show fit	3'-phospho-adenylylsulfate reductase
fecABCDE Show fit	32.15		fecD Links RegulonDB EcoCyc Show fit fecE Links RegulonDB EcoCyc Show fit fecB Links RegulonDB EcoCyc Show fit fecC Links RegulonDB EcoCyc Show fit fecA Links RegulonDB EcoCyc Show fit	ferric citrate ABC transporter - membrane subunit ferric citrate ABC transporter - ATP binding subunit ferric citrate ABC transporter - periplasmic binding protein ferric citrate ABC transporter - membrane subunit ferric citrate outer membrane porin FecA
metNIQ Show fit	22.67		metI Links RegulonDB EcoCyc Show fit metN Links RegulonDB EcoCyc Show fit metQ Links RegulonDB EcoCyc Show fit	L-methionine / D-methionine ABC transporter - membrane subunit L-methionine / D-methionine ABC transporter - ATP binding subunit L-methionine / D-methionine ABC transporter - periplasmic binding protein
cydAB Show fit	3.17		cydA Links RegulonDB EcoCyc Show fit cydB Links RegulonDB EcoCyc Show fit	cytochrome bd-I terminal oxidase subunit I cytochrome bd-I terminal oxidase subunit II

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
5.7	22.7	GO:0000101	sulfur amino acid transport(GO:0000101)
4.6	32.1	GO:0072512	ferric iron transport(GO:0015682) trivalent inorganic cation transport(GO:0072512)
0.8	3.2	GO:0019646	aerobic electron transport chain(GO:0019646)
0.8	33.2	GO:0006790	sulfur compound metabolic process(GO:0006790)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
7.6	22.7	GO:0009274	peptidoglycan-based cell wall(GO:0009274)
2.9	32.1	GO:0055052	ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052)
1.1	3.2	GO:0070069	cytochrome complex(GO:0070069)
0.1	33.2	GO:0005737	cytoplasm(GO:0005737)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
4.6	32.1	GO:0015603	iron chelate transmembrane transporter activity(GO:0015603)
3.8	37.6	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor(GO:0016671)
3.2	22.7	GO:1901682	sulfur compound transmembrane transporter activity(GO:1901682)
1.1	3.2	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors(GO:0016679) oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682)