GSE67402: E.coli regulatory changes under long-term starvation
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
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ilvL Show fit | 5.92 |
ilvGEDA operon leader peptide |
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acs-yjcH-actP Show fit | 5.48 |
acetyl-CoA synthetase (AMP-forming) acetate / glycolate : cation symporter conserved inner membrane protein |
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uspB Show fit | 5.34 |
predicted universal stress (ethanol tolerance) protein B |
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ilvLXG_1G_2MEDA Show fit | 4.35 |
branched-chain amino-acid aminotransferase small protein acetolactate synthase / acetohydroxybutanoate synthase, regulatory subunit ilvGEDA operon leader peptide acetolactate synthase II, large subunit, N-ter fragment (pseudogene) dihydroxy acid dehydratase acetolactate synthase II, large subunit, C-ter fragment (pseudogene) threonine deaminase |
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glcDEFGBA Show fit | 4.05 |
glycolate oxidase, predicted FAD-linked subunit glycolate oxidase, predicted FAD-binding subunit glycolate oxidase, predicted iron-sulfur subunit conserved protein glycolate / lactate:H+ symporter malate synthase G |
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yadV-htrE Show fit | 4.00 |
putative outer membrane usher protein probable pilin chaperone similar to PapD |
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patA Show fit | 3.85 |
putrescine aminotransferase |
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osmY Show fit | 3.44 |
periplasmic chaperone, osmotically induced |
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ssuEADCB Show fit | 3.08 |
NADPH-dependent FMN reductase alkanesulfonate monooxygenase, FMNH2-dependent aliphatic sulfonate ABC transporter - periplasmic binding protein aliphatic sulfonate ABC transporter - membrane subunit aliphatic sulfonate ABC transporter - ATP binding subunit |
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ihfA Show fit | 2.92 |
integration host factor (IHF), α subunit |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.5 | 10.3 | GO:0009099 | valine biosynthetic process(GO:0009099) |
1.3 | 6.7 | GO:0046487 | glyoxylate metabolic process(GO:0046487) |
1.4 | 5.7 | GO:0043711 | pilus organization(GO:0043711) |
1.8 | 5.5 | GO:0018394 | tellurite transport(GO:0015710) peptidyl-lysine acetylation(GO:0018394) post-translational protein modification(GO:0043687) |
2.7 | 5.3 | GO:0097305 | response to alcohol(GO:0097305) |
1.0 | 4.0 | GO:0015748 | organophosphate ester transport(GO:0015748) |
1.0 | 3.9 | GO:0042178 | xenobiotic catabolic process(GO:0042178) |
0.6 | 3.8 | GO:0009447 | polyamine catabolic process(GO:0006598) putrescine catabolic process(GO:0009447) |
1.2 | 3.6 | GO:0046379 | extracellular polysaccharide biosynthetic process(GO:0045226) extracellular polysaccharide metabolic process(GO:0046379) |
1.0 | 3.1 | GO:0009970 | cellular response to sulfate starvation(GO:0009970) xenobiotic transport(GO:0042908) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 16.8 | GO:0005886 | plasma membrane(GO:0005886) |
0.6 | 4.5 | GO:0045203 | integral component of cell outer membrane(GO:0045203) |
0.7 | 2.0 | GO:0031235 | intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235) |
0.2 | 1.7 | GO:0042995 | cell projection(GO:0042995) |
0.1 | 1.7 | GO:0055052 | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052) |
0.2 | 0.5 | GO:0031237 | intrinsic component of periplasmic side of plasma membrane(GO:0031237) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.4 | 9.5 | GO:0043879 | glycolate transmembrane transporter activity(GO:0043879) |
1.4 | 4.3 | GO:0003984 | acetolactate synthase activity(GO:0003984) |
0.8 | 3.9 | GO:0004300 | enoyl-CoA hydratase activity(GO:0004300) |
0.2 | 3.8 | GO:0008483 | transaminase activity(GO:0008483) |
1.0 | 3.1 | GO:0004497 | monooxygenase activity(GO:0004497) |
0.9 | 2.6 | GO:0046912 | AMP binding(GO:0016208) transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer(GO:0046912) |
0.5 | 2.5 | GO:0042301 | phosphate ion binding(GO:0042301) |
0.5 | 2.0 | GO:0008940 | nitrate reductase activity(GO:0008940) metallochaperone activity(GO:0016530) |
1.8 | 1.8 | GO:0003988 | acetyl-CoA C-acyltransferase activity(GO:0003988) |
0.0 | 1.8 | GO:0005506 | iron ion binding(GO:0005506) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 4.0 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |