GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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lrp | 0.23 | 2.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
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ilvIH Show fit | 2.94 |
acetolactate synthase / acetohydroxybutanoate synthase, catalytic subunit acetolactate synthase / acetohydroxybutanoate synthase, regulatory subunit |
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livJ Show fit | 2.52 |
branched chain amino acid / phenylalanine ABC transporter - periplasmic binding protein |
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lrp Show fit | 2.46 |
Lrp transcriptional dual regulator |
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serC-aroA Show fit | 2.35 |
3-phosphoshikimate-1-carboxyvinyltransferase |
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gltBDF Show fit | 2.17 |
glutamate synthase, large subunit glutamate synthase, small subunit periplasmic protein |
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serC Show fit | 2.06 |
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livKHMGF Show fit | 1.92 |
branched chain amino acid / phenylalanine ABC transporter - ATP binding subunit branched chain amino acid / phenylalanine ABC transporter - ATP binding subunit branched chain amino acid / phenylalanine ABC transporter - membrane subunit L-leucine / L-phenylalanine ABC transporter - periplasmic binding protein branched chain amino acid / phenylalanine ABC transporter - membrane subunit |
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serA Show fit | 1.81 |
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rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF Show fit | 1.37 |
rrlD 23S ribosomal RNA tRNAileU tRNAalaU tRNAthrV rrfF 5S ribosomal RNA rrsD 16S ribosomal RNA rrfD 5S ribosomal RNA |
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gcvTHP Show fit | 1.19 |
glycine cleavage system H protein glycine decarboxylase aminomethyltransferase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.4 | 4.1 | GO:0015820 | branched-chain amino acid transport(GO:0015803) leucine transport(GO:0015820) |
0.9 | 3.8 | GO:0006549 | isoleucine metabolic process(GO:0006549) isoleucine biosynthetic process(GO:0009097) |
0.8 | 2.5 | GO:0009098 | leucine metabolic process(GO:0006551) leucine biosynthetic process(GO:0009098) |
0.8 | 2.3 | GO:0046417 | chorismate metabolic process(GO:0046417) |
0.7 | 2.2 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
0.5 | 1.6 | GO:0009099 | valine biosynthetic process(GO:0009099) |
0.4 | 1.2 | GO:0019464 | glycine decarboxylation via glycine cleavage system(GO:0019464) |
0.3 | 0.9 | GO:0006067 | ethanol metabolic process(GO:0006067) |
0.2 | 0.9 | GO:0006857 | oligopeptide transport(GO:0006857) oligopeptide transmembrane transport(GO:0035672) |
0.1 | 0.5 | GO:1902022 | lysine transport(GO:0015819) L-lysine transport(GO:1902022) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.2 | GO:0005829 | cytosol(GO:0005829) |
0.1 | 4.9 | GO:0030288 | outer membrane-bounded periplasmic space(GO:0030288) |
0.2 | 2.9 | GO:1990234 | transferase complex(GO:1990234) |
0.2 | 1.9 | GO:0055052 | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052) |
0.1 | 1.2 | GO:1990204 | oxidoreductase complex(GO:1990204) |
Log-likelihood per target | Total log-likelihood | Term | Description |
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1.3 | 3.8 | GO:0003984 | acetolactate synthase activity(GO:0003984) |
0.5 | 2.8 | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638) |
0.1 | 2.3 | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups(GO:0016765) |
0.6 | 1.9 | GO:0015192 | L-phenylalanine transmembrane transporter activity(GO:0015192) |
0.0 | 1.6 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
0.3 | 0.9 | GO:0035673 | oligopeptide transporter activity(GO:0015198) peptidoglycan transporter activity(GO:0015647) oligopeptide transmembrane transporter activity(GO:0035673) |
0.1 | 0.9 | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor(GO:0016620) |
0.1 | 0.3 | GO:0004777 | succinate-semialdehyde dehydrogenase (NAD+) activity(GO:0004777) |
0.0 | 0.2 | GO:0004812 | aminoacyl-tRNA ligase activity(GO:0004812) ligase activity, forming carbon-oxygen bonds(GO:0016875) ligase activity, forming aminoacyl-tRNA and related compounds(GO:0016876) |