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GSE67402: E.coli regulatory changes under long-term starvation
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Results for LsrR
Z-value: 0.75
Transcription factors associated with LsrR
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
lsrR
|
lsrR | LsrR DNA-binding transcriptional repressor |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| lsrR | -0.15 | 4.5e-01 | Click! |
Activity profile of LsrR motif
Sorted Z-values of LsrR motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| lsrRK | 15.18 |
lsrK
lsrR
|
autoinducer-2 kinase LsrR DNA-binding transcriptional repressor |
|
| lsrACDBFG-tam | 10.91 |
lsrA
lsrC
lsrB
lsrD
lsrG
lsrF
tam
|
AI-2 ABC transporter - ATP binding subunit Autoinducer-2 ABC transporter - membrane subunit autoinducer-2 ABC transporter - periplasmic binding protein Autoinducer-2 ABC transporter - membrane subunit phospho-AI-2 isomerase 3-hydroxy-2,4-pentadione 5-phosphate thiolase trans-aconitate 2-methyltransferase |
Network of associatons between targets according to the STRING database.
First level regulatory network of LsrR
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 5.1 | 15.2 | GO:0009372 | quorum sensing(GO:0009372) |
| 0.1 | 10.9 | GO:0055114 | oxidation-reduction process(GO:0055114) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 26.1 | GO:0005829 | cytosol(GO:0005829) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 15.2 | GO:0000987 | bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159) |
| 0.8 | 10.9 | GO:0015145 | monosaccharide transmembrane transporter activity(GO:0015145) |