GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
metR Links RegulonDB EcoCyc	metR	MetR DNA-binding transcriptional dual regulator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
metR		0.06	7.6e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
metE Show fit	6.38		metE Links RegulonDB EcoCyc Show fit	cobalamin-independent homocysteine transmethylase
hmp Show fit	4.81		hmp Links RegulonDB EcoCyc Show fit	nitric oxide dioxygenase
glyA Show fit	1.83		glyA Links RegulonDB EcoCyc Show fit	serine hydroxymethyltransferase
metH Show fit	1.59		metH Links RegulonDB EcoCyc Show fit	cobalamin-dependent methionine synthase

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.7	8.0	GO:0035999	tetrahydrofolate interconversion(GO:0035999)
1.6	4.8	GO:0046209	nitric oxide metabolic process(GO:0046209) nitric oxide catabolic process(GO:0046210)
0.6	1.8	GO:0006565	L-serine catabolic process(GO:0006565)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.6	6.4	GO:0005576	extracellular region(GO:0005576)
0.0	8.2	GO:0005622	intracellular(GO:0005622)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.0	8.0	GO:0008172	S-methyltransferase activity(GO:0008172)
1.2	4.8	GO:0032843	hydroperoxide reductase activity(GO:0032843) dioxygenase activity(GO:0051213)
0.4	1.8	GO:0016742	hydroxymethyl-, formyl- and related transferase activity(GO:0016742)