GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
mlrA Links RegulonDB EcoCyc	mlrA	MlrA DNA binding transcriptional activator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
mlrA		-0.04	8.6e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
rplU-rpmA Show fit	34.88		rpmA Links RegulonDB EcoCyc Show fit rplU Links RegulonDB EcoCyc Show fit	50S ribosomal subunit protein L27 50S ribosomal subunit protein L21
rplU-rpmA-yhbE-obgE Show fit	33.19		rpmA Links RegulonDB EcoCyc Show fit yhbE Links RegulonDB EcoCyc Show fit rplU Links RegulonDB EcoCyc Show fit obgE Links RegulonDB EcoCyc Show fit	50S ribosomal subunit protein L27 inner membrane protein YhbE 50S ribosomal subunit protein L21 GTPase involved in chromosome partitioning and ribosome assembly
ibaG Show fit	8.87		ibaG Links RegulonDB EcoCyc Show fit	predicted DNA-binding transcriptional regulator
csgDEFG Show fit	5.90		csgG Links RegulonDB EcoCyc Show fit csgF Links RegulonDB EcoCyc Show fit csgE Links RegulonDB EcoCyc Show fit csgD Links RegulonDB EcoCyc Show fit	curli secretion channel curli assembly component curli transport specificity factor CsgD DNA-binding transcriptional dual regulator

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
6.6	33.2	GO:0022611	dormancy process(GO:0022611)
0.8	5.9	GO:0043900	regulation of multi-organism process(GO:0043900) regulation of single-species biofilm formation(GO:1900190)
0.6	8.9	GO:0001101	response to acid chemical(GO:0001101)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
4.9	68.1	GO:0022625	large ribosomal subunit(GO:0015934) cytosolic large ribosomal subunit(GO:0022625)
0.7	5.9	GO:0031246	intrinsic component of periplasmic side of cell outer membrane(GO:0031246)
0.0	8.9	GO:0005829	cytosol(GO:0005829)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
4.5	68.1	GO:0003735	structural constituent of ribosome(GO:0003735)
0.3	5.9	GO:0001159	bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)