GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
nadR Links RegulonDB EcoCyc	nadR	NadR DNA-binding transcriptional repressor and NMN adenylyltransferase

Promoter	Log-likelihood	Transcript	Gene	Gene Info
nadB Show fit	4.15		nadB Links RegulonDB EcoCyc Show fit	L-aspartate oxidase
nadA-pnuC Show fit	3.95		nadA Links RegulonDB EcoCyc Show fit pnuC Links RegulonDB EcoCyc Show fit	quinolinate synthase nicotinamide riboside transporter
pncB Show fit	0.73		pncB Links RegulonDB EcoCyc Show fit	nicotinate phosphoribosyltransferase

Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.0	8.1	GO:0034628	nicotinamide nucleotide biosynthetic process from aspartate(GO:0019355) 'de novo' NAD biosynthetic process(GO:0034627) 'de novo' NAD biosynthetic process from aspartate(GO:0034628)
0.2	0.7	GO:0019363	NAD biosynthetic process(GO:0009435) nicotinamide nucleotide biosynthetic process(GO:0019359) pyridine nucleotide biosynthetic process(GO:0019363) NAD metabolic process(GO:0019674)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	8.8	GO:0005829	cytosol(GO:0005829)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.8	3.9	GO:0015932	nucleoside transmembrane transporter activity(GO:0005337) nucleobase-containing compound transmembrane transporter activity(GO:0015932)
0.7	4.2	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638)
0.1	0.7	GO:0016763	transferase activity, transferring pentosyl groups(GO:0016763)