GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
nagC | 0.06 | 7.8e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
ptsHI-crr Show fit | 6.36 |
PTS enzyme I HPr Enzyme IIAGlc; Crr |
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dinI Show fit | 5.28 |
DNA damage-inducible protein I |
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fimB Show fit | 4.34 |
regulator for fimA |
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nanCM Show fit | 2.56 |
N-acetylneuraminic acid outer membrane channel N-acetylneuraminate mutarotase |
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nanCMS Show fit | 2.18 |
N-acetylneuraminic acid outer membrane channel N-acetylneuraminate mutarotase probable 9-O-acetyl-N-acetylneuraminate esterase |
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galP Show fit | 0.76 |
galactose:H+ symporter |
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nagBAC-umpH Show fit | 0.72 |
glucosamine-6-phosphate deaminase NagC DNA-binding transcriptional dual regulator UMP phosphatase N-acetylglucosamine-6-phosphate deacetylase |
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nagE Show fit | 0.58 |
N-acetylglucosamine PTS permease |
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feoABC Show fit | 0.31 |
Fe2+ transporter FeoB predicted DNA-binding transcriptional regulator ferrous iron transport protein A |
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chiP-ybfN Show fit | 0.18 |
chitobiose outer membrane channel predicted lipoprotein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.1 | 6.4 | GO:0031329 | carbohydrate utilization(GO:0009758) regulation of glucose metabolic process(GO:0010906) regulation of cellular catabolic process(GO:0031329) regulation of cellular carbohydrate catabolic process(GO:0043471) negative regulation of carbohydrate metabolic process(GO:0045912) |
0.3 | 5.3 | GO:0009432 | SOS response(GO:0009432) |
0.5 | 4.9 | GO:0015772 | oligosaccharide transport(GO:0015772) |
0.2 | 4.3 | GO:0006310 | DNA recombination(GO:0006310) |
0.2 | 0.8 | GO:0015757 | galactose transport(GO:0015757) |
0.2 | 0.7 | GO:0009175 | nucleoside monophosphate catabolic process(GO:0009125) pyrimidine nucleoside monophosphate catabolic process(GO:0009131) ribonucleoside monophosphate catabolic process(GO:0009158) pyrimidine ribonucleoside monophosphate metabolic process(GO:0009173) pyrimidine ribonucleoside monophosphate catabolic process(GO:0009175) UMP metabolic process(GO:0046049) UMP catabolic process(GO:0046050) |
0.1 | 0.6 | GO:0009254 | peptidoglycan turnover(GO:0009254) |
0.1 | 0.3 | GO:0072511 | divalent metal ion transport(GO:0070838) divalent inorganic cation transport(GO:0072511) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 6.4 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
0.6 | 4.7 | GO:0045203 | integral component of cell outer membrane(GO:0045203) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 6.4 | GO:0008047 | enzyme activator activity(GO:0008047) |
0.5 | 5.3 | GO:0019899 | enzyme binding(GO:0019899) |
1.6 | 4.7 | GO:0015136 | sialic acid transmembrane transporter activity(GO:0015136) |
0.2 | 0.8 | GO:0005354 | galactose transmembrane transporter activity(GO:0005354) |
0.2 | 0.7 | GO:0008253 | 5'-nucleotidase activity(GO:0008253) |
0.2 | 0.6 | GO:0019534 | toxin transporter activity(GO:0019534) |
0.0 | 0.3 | GO:0005381 | iron ion transmembrane transporter activity(GO:0005381) |
0.0 | 0.2 | GO:0022838 | substrate-specific channel activity(GO:0022838) |