GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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narL | -0.28 | 1.6e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
ompW Show fit | 5.64 |
outer membrane protein W |
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hybOABCDEFG Show fit | 4.18 |
hydrogenase 2 accessory protein protein involved with the maturation of hydrogenases 1 and 2 hydrogenase 2-specific chaperone predicted maturation peptidase for hydrogenase 2 hydrogenase 2, large subunit hydrogenase 2 - integral membrane subunit HybB hydrogenase 2 - [Fe-S] binding, ferredoxin-type component HybA hydrogenase 2, small subunit |
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narK Show fit | 4.09 |
nitrate:nitrite antiporter NarK |
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ytfE Show fit | 3.85 |
iron-sulfur cluster repair protein YtfE |
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fdnGHI Show fit | 3.08 |
formate dehydrogenase N, β subunit formate dehydrogenase N, γ subunit formate dehydrogenase N, α subunit |
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dmsABC Show fit | 2.97 |
dimethyl sulfoxide reductase, chain A dimethyl sulfoxide reductase, chain B dimethyl sulfoxide reductase, chain C |
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dcuB-fumB Show fit | 2.96 |
fumarase B dicarboxylate transporter DcuB |
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torCAD Show fit | 2.92 |
chaperone protein for trimethylamine-N-oxide oxidoreductase I trimethylamine N-oxide reductase, catalytic subunit trimethylamine N-oxide reductase, cytochrome c-type subunit |
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yeaR-yoaG Show fit | 2.66 |
predicted protein conserved protein |
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narGHJI Show fit | 2.38 |
nitrate reductase A, α subunit nitrate reductase A, γ subunit nitrate reductase A, β subunit molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 13.8 | GO:0009061 | anaerobic respiration(GO:0009061) |
0.9 | 4.5 | GO:2001057 | reactive nitrogen species metabolic process(GO:2001057) |
1.4 | 4.2 | GO:0019563 | glycerol catabolic process(GO:0019563) |
1.0 | 3.9 | GO:0030091 | protein repair(GO:0030091) |
0.8 | 2.3 | GO:0015707 | nitrite transport(GO:0015707) |
0.3 | 2.1 | GO:0018209 | peptidyl-serine modification(GO:0018209) |
0.6 | 1.8 | GO:0009437 | carnitine metabolic process(GO:0009437) |
0.1 | 1.5 | GO:0006468 | protein phosphorylation(GO:0006468) |
0.4 | 1.1 | GO:0071310 | cellular response to organic substance(GO:0071310) |
0.1 | 0.4 | GO:0006935 | chemotaxis(GO:0006935) taxis(GO:0042330) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.4 | 9.5 | GO:0098567 | periplasmic side of plasma membrane(GO:0098567) |
0.1 | 5.6 | GO:0044462 | cell outer membrane(GO:0009279) external encapsulating structure part(GO:0044462) |
0.1 | 4.4 | GO:0030288 | outer membrane-bounded periplasmic space(GO:0030288) |
0.3 | 3.1 | GO:0031233 | intrinsic component of external side of plasma membrane(GO:0031233) |
2.4 | 2.4 | GO:0031235 | intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235) |
0.3 | 0.9 | GO:0045273 | respiratory chain complex II(GO:0045273) plasma membrane respiratory chain complex II(GO:0045274) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 5.6 | GO:0030151 | molybdenum ion binding(GO:0030151) |
0.8 | 4.2 | GO:1902670 | carbon dioxide binding(GO:1902670) |
0.1 | 3.9 | GO:0005506 | iron ion binding(GO:0005506) |
0.6 | 3.0 | GO:0004333 | fumarate hydratase activity(GO:0004333) |
0.3 | 3.0 | GO:0009055 | electron carrier activity(GO:0009055) |
1.2 | 2.4 | GO:0008940 | nitrate reductase activity(GO:0008940) |
0.8 | 2.3 | GO:0015113 | nitrite transmembrane transporter activity(GO:0015113) |
0.3 | 2.2 | GO:0016661 | oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661) |
0.7 | 2.1 | GO:0051192 | prosthetic group binding(GO:0051192) |
0.0 | 1.8 | GO:0003700 | transcription factor activity, sequence-specific DNA binding(GO:0003700) |